PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
FexcContig750331170.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
FexcContig7540332110.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
FexcContig7690336150.1 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig800180344060.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
FexcContig802380344480.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig8120347270.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig8120347280.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig8120347280.2 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig8160347890.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig8160347900.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig8160347910.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig8160347920.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig8160347920.2 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig82090349410.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig83210352110.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig840353890.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig840353900.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig884960364910.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
FexcContig9210373500.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
FexcContig9410377340.2 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
FexcContig9420377540.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
FexcContig99100387440.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
FexcContig99100387450.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH