Fraxinus excelsior (fraxinus_excelsior)
Imported from atlas release summary for Fraxinus excelsior.
2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2479
Candidate Genes
BAHD
6.49%
C4H
5.86%
C3'H/CYP98A
5.44%
UGT
3.77%
IFS
3.67%
POD
3.5%
UFGT
3.41%
7DLGT
3.38%
Other Families
64.48%
More Families (95)
T3O
198
3.35%
4CL
186
3.14%
CYP76
181
3.06%
F3H
169
2.86%
NMT
150
2.54%
DWF4/CYP90B1
142
2.4%
CAD
136
2.3%
SMT1/SMT2/SMT3
121
2.04%
STR
111
1.88%
CODM/T6ODM
111
1.88%
F3'H/CYP75B
111
1.88%
CYP71
98
1.66%
CAS
88
1.49%
TPS
87
1.47%
BR6OX2/CYP85A2
85
1.44%
GES
78
1.32%
IFR
77
1.3%
LAC
73
1.23%
GS
72
1.22%
H6H
72
1.22%
SGD
68
1.15%
CYP90D1
63
1.06%
TRI/TRII
56
0.95%
CSE
50
0.85%
RAS
50
0.85%
T16H
45
0.76%
PMT
43
0.73%
SLS
42
0.71%
BBE
41
0.69%
IO
41
0.69%
TAT
39
0.66%
HCT
38
0.64%
PYKS
37
0.63%
ANR
37
0.63%
7DLH
36
0.61%
PAL
36
0.61%
NCS
34
0.57%
CPD/CYP90A1
34
0.57%
CCR
33
0.56%
CYP51G1
31
0.52%
G8O/G8H
30
0.51%
FNS
29
0.49%
COMT
27
0.46%
F5H/CYP84A
27
0.46%
GGPPS
25
0.42%
F3'5'H/CYP75A
24
0.41%
CPR
22
0.37%
BR6OX1/CYP85A1
21
0.35%
DFR
20
0.34%
16OMT
19
0.32%
8HGO
19
0.32%
CNMT
19
0.32%
ANS/LDOX
19
0.32%
AACT
19
0.32%
SMO1/SMO2
18
0.3%
FPPS
18
0.3%
SQS/FDFT1
16
0.27%
COR
14
0.24%
SQE
14
0.24%
MPO
12
0.2%
LAMT
12
0.2%
ISY
11
0.19%
DXS
11
0.19%
CCoAOMT
10
0.17%
DXR
10
0.17%
CYP719
9
0.15%
HPPR
9
0.15%
HMGR
9
0.15%
HMGS
9
0.15%
CHI
8
0.14%
CHS
8
0.14%
TDC
7
0.12%
DET2
7
0.12%
ROT3/CYP90C1
7
0.12%
MVD
7
0.12%
HDR/IspH
7
0.12%
TYDC_DDC
6
0.1%
MVK
6
0.1%
ADC
5
0.08%
DWF1
5
0.08%
CMK/IspE
4
0.07%
HDS/IspG
4
0.07%
CYP80B1
3
0.05%
XMT_MXMT_DXMT
3
0.05%
FK
3
0.05%
DWF5
3
0.05%
HYD1
3
0.05%
CPI1
3
0.05%
IDI
3
0.05%
PMK
3
0.05%
FLS
2
0.03%
DWF7
2
0.03%
MCT/IspD
2
0.03%
CYP80F1
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 749 | 20 | BAHD (302) | View species results |
| Alkaloid pathway | 573 | 21 | 7DLGT (101) | View species results |
| Phenylpropanoid pathway | 470 | 12 | POD (198) | View species results |
| Flavonoid pathway | 280 | 10 | UFGT (183) | View species results |
| Rosmarinic acid pathway | 206 | 7 | C4H (90) | View species results |
| Steroid pathway | 201 | 12 | SMT1/SMT2/SMT3 (78) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2115 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 472 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| FexcContig3460183430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36220191730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36220191730.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36220191730.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36230191960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig37900200460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig39490208370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig4290224080.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig4290224080.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig47050240450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig4900247630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig4900247640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig497590250450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig49840250910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig5020252410.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig5020252410.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig50400253140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig50400253140.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig52170259940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig5240260850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig52470261280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig52910263120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig52910263120.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig56100275720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig57280280320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig58280284240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig58280284240.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig58280284240.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig58890286330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig59830290670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig6340301770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig6700311420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig68210314610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig6850315260.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig6850315260.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7500331310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7700336840.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7700336840.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7750338050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7750338050.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7750338050.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig7890341120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig80860346070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig810346700.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig811840347230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig8360352900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig8360352900.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig8360352900.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig8540357620.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig86300359700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |