PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2990
Candidate Protein Records
2479
Pathway-Level Records
5917
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
FexcContig2300110870.1 Alkaloid T3O medium borderline
FexcContig2300110870.2 Alkaloid T3O medium borderline
FexcContig2470123060.1 Alkaloid T3O medium borderline
FexcContig2470123070.1 Alkaloid T3O medium borderline
FexcContig24830124090.1 Alkaloid T3O medium borderline
FexcContig26210134100.1 Alkaloid T3O medium pass
FexcContig2660136140.1 Alkaloid T3O medium borderline
FexcContig26730136830.1 Alkaloid T3O low borderline
FexcContig27720143270.1 Alkaloid T3O medium borderline
FexcContig28460148540.1 Alkaloid T3O medium pass
FexcContig2860149080.1 Alkaloid T3O medium pass
FexcContig2860149080.2 Alkaloid T3O medium pass
FexcContig29270153890.1 Alkaloid T3O medium pass
FexcContig29670156010.1 Alkaloid T3O medium borderline
FexcContig29670156020.1 Alkaloid T3O medium borderline
FexcContig300158340.1 Alkaloid T3O medium borderline
FexcContig30157950.1 Alkaloid T3O medium pass
FexcContig3120164280.1 Alkaloid T3O medium borderline
FexcContig32140169910.2 Alkaloid T3O medium pass
FexcContig32950174540.1 Alkaloid T3O medium borderline
FexcContig33000174920.1 Alkaloid T3O medium borderline
FexcContig33740178140.1 Alkaloid T3O low borderline
FexcContig35080185680.1 Alkaloid T3O medium pass
FexcContig367110194560.1 Alkaloid T3O medium borderline
FexcContig37360197910.1 Alkaloid T3O medium borderline
FexcContig37720199590.1 Alkaloid T3O medium borderline
FexcContig37790199760.1 Alkaloid T3O medium borderline
FexcContig37890200260.1 Alkaloid T3O medium borderline
FexcContig37890200270.1 Alkaloid T3O medium borderline
FexcContig38910205770.1 Alkaloid T3O low borderline
FexcContig38910205770.2 Alkaloid T3O low borderline
FexcContig3910206930.1 Alkaloid T3O low borderline
FexcContig3910206930.2 Alkaloid T3O low borderline
FexcContig3930207660.1 Alkaloid T3O medium borderline
FexcContig39880210280.1 Alkaloid T3O medium borderline
FexcContig39880210290.1 Alkaloid T3O medium borderline
FexcContig39880210300.1 Alkaloid T3O medium borderline
FexcContig40210212040.1 Alkaloid T3O medium borderline
FexcContig40980215100.1 Alkaloid T3O medium borderline
FexcContig41820219870.1 Alkaloid T3O medium pass
FexcContig429480224370.1 Alkaloid T3O medium borderline
FexcContig43280225750.1 Alkaloid T3O medium borderline
FexcContig44770231090.1 Alkaloid T3O medium pass
FexcContig44900231630.1 Alkaloid T3O medium borderline
FexcContig452300233420.1 Alkaloid T3O medium borderline
FexcContig482700244920.1 Alkaloid T3O medium borderline
FexcContig48380245150.1 Alkaloid T3O medium pass
FexcContig49380249120.1 Alkaloid T3O medium borderline
FexcContig5000251760.1 Alkaloid T3O medium borderline
FexcContig50110252220.1 Alkaloid T3O medium borderline