PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
FexcContig13460035890.1 Rosmarinic Acid C4H medium pass
FexcContig13490036240.1 Rosmarinic Acid C4H medium pass
FexcContig13490036240.2 Rosmarinic Acid C4H medium pass
FexcContig13490036240.3 Rosmarinic Acid C4H medium pass
FexcContig13720038800.1 Rosmarinic Acid C4H medium pass
FexcContig13720038800.2 Rosmarinic Acid C4H medium pass
FexcContig13880040110.1 Rosmarinic Acid C4H low borderline
FexcContig140180041570.1 Rosmarinic Acid C4H low borderline
FexcContig14260043340.1 Rosmarinic Acid C4H low borderline
FexcContig14640046430.1 Rosmarinic Acid C4H low borderline
FexcContig14850047620.1 Rosmarinic Acid C4H low borderline
FexcContig14880047880.1 Rosmarinic Acid C4H low borderline
FexcContig14880047900.1 Rosmarinic Acid C4H low borderline
FexcContig14880047910.1 Rosmarinic Acid C4H low borderline
FexcContig14880047910.2 Rosmarinic Acid C4H low borderline
FexcContig1500049250.1 Rosmarinic Acid C4H low borderline
FexcContig1500049250.2 Rosmarinic Acid C4H low borderline
FexcContig1500049250.3 Rosmarinic Acid C4H low borderline
FexcContig152670051300.1 Rosmarinic Acid C4H medium pass
FexcContig15300051700.1 Rosmarinic Acid C4H low borderline
FexcContig15510053400.1 Rosmarinic Acid C4H medium pass
FexcContig15910056330.1 Rosmarinic Acid C4H low borderline
FexcContig16230058760.1 Rosmarinic Acid C4H low borderline
FexcContig16230058790.1 Rosmarinic Acid C4H medium pass
FexcContig16260058870.1 Rosmarinic Acid C4H low borderline
FexcContig1630059200.1 Rosmarinic Acid C4H low borderline
FexcContig1630059230.1 Rosmarinic Acid C4H medium pass
FexcContig1640060050.1 Rosmarinic Acid C4H low borderline
FexcContig16440060300.1 Rosmarinic Acid C4H medium pass
FexcContig16530061100.1 Rosmarinic Acid C4H low borderline
FexcContig16850063640.1 Rosmarinic Acid C4H low borderline
FexcContig17050065250.3 Rosmarinic Acid C4H low borderline
FexcContig17330067500.1 Rosmarinic Acid C4H medium pass
FexcContig1750068760.1 Rosmarinic Acid C4H low borderline
FexcContig1750068770.1 Rosmarinic Acid C4H low borderline
FexcContig1750068780.1 Rosmarinic Acid C4H low borderline
FexcContig17940072080.1 Rosmarinic Acid C4H medium pass
FexcContig18150073820.2 Rosmarinic Acid C4H low borderline
FexcContig18290074950.1 Rosmarinic Acid C4H medium pass
FexcContig18290074950.2 Rosmarinic Acid C4H medium pass
FexcContig18290074950.3 Rosmarinic Acid C4H low borderline
FexcContig18290074980.1 Rosmarinic Acid C4H low borderline
FexcContig18360075640.1 Rosmarinic Acid C4H low borderline
FexcContig18450076400.1 Rosmarinic Acid C4H medium pass
FexcContig18450076410.1 Rosmarinic Acid C4H medium pass
FexcContig18450076420.1 Rosmarinic Acid C4H medium pass
FexcContig193160083740.1 Rosmarinic Acid C4H medium pass
FexcContig19450084280.1 Rosmarinic Acid C4H low borderline
FexcContig19800086970.1 Rosmarinic Acid C4H low borderline
FexcContig2050093320.1 Rosmarinic Acid C4H medium pass