PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Lsic01G0007180.1 Rosmarinic Acid C4H low borderline
Lsic01G0007190.1 Rosmarinic Acid C4H low borderline
Lsic01G0007200.1 Rosmarinic Acid C4H medium pass
Lsic01G0007210.1 Rosmarinic Acid C4H medium pass
Lsic01G0007220.1 Rosmarinic Acid C4H medium pass
Lsic01G0009410.1 Rosmarinic Acid C4H low borderline
Lsic01G0009420.1 Rosmarinic Acid C4H medium pass
Lsic01G0009430.1 Rosmarinic Acid C4H low borderline
Lsic01G0009440.1 Rosmarinic Acid C4H low borderline
Lsic01G0010730.1 Rosmarinic Acid C4H low borderline
Lsic01G0010740.1 Rosmarinic Acid C4H low borderline
Lsic01G0018910.1 Rosmarinic Acid C4H medium pass
Lsic02G0001310.1 Rosmarinic Acid C4H low borderline
Lsic02G0004260.1 Rosmarinic Acid C4H medium pass
Lsic02G0004270.1 Rosmarinic Acid C4H low borderline
Lsic02G0004280.1 Rosmarinic Acid C4H low borderline
Lsic02G0004300.1 Rosmarinic Acid C4H low borderline
Lsic02G0004310.1 Rosmarinic Acid C4H medium pass
Lsic02G0004320.1 Rosmarinic Acid C4H low borderline
Lsic02G0004330.1 Rosmarinic Acid C4H low borderline
Lsic02G0004340.1 Rosmarinic Acid C4H medium pass
Lsic02G0004350.1 Rosmarinic Acid C4H low borderline
Lsic02G0004360.1 Rosmarinic Acid C4H low borderline
Lsic02G0004370.1 Rosmarinic Acid C4H low borderline
Lsic02G0004390.1 Rosmarinic Acid C4H low borderline
Lsic02G0004400.1 Rosmarinic Acid C4H medium pass
Lsic02G0004420.1 Rosmarinic Acid C4H medium pass
Lsic02G0012060.1 Rosmarinic Acid C4H medium pass
Lsic02G0013430.1 Rosmarinic Acid C4H low borderline
Lsic02G0020170.1 Rosmarinic Acid C4H low borderline
Lsic02G0025950.1 Rosmarinic Acid C4H medium pass
Lsic02G0025960.1 Rosmarinic Acid C4H low borderline
Lsic02G0029440.1 Rosmarinic Acid C4H low borderline
Lsic03G0001090.1 Rosmarinic Acid C4H low borderline
Lsic03G0002430.1 Rosmarinic Acid C4H low borderline
Lsic03G0004920.1 Rosmarinic Acid C4H low borderline
Lsic03G0012180.1 Rosmarinic Acid C4H low borderline
Lsic03G0012190.1 Rosmarinic Acid C4H medium pass
Lsic03G0012200.1 Rosmarinic Acid C4H low borderline
Lsic03G0014890.1 Rosmarinic Acid C4H low borderline
Lsic03G0014910.1 Rosmarinic Acid C4H low borderline
Lsic03G0016270.1 Rosmarinic Acid C4H medium pass
Lsic03G0016280.1 Rosmarinic Acid C4H medium pass
Lsic03G0016320.1 Rosmarinic Acid C4H low borderline
Lsic03G0017130.1 Rosmarinic Acid C4H medium pass
Lsic03G0017140.1 Rosmarinic Acid C4H low borderline
Lsic03G0019480.1 Rosmarinic Acid C4H low borderline
Lsic04G0001330.1 Rosmarinic Acid C4H low borderline
Lsic04G0003490.1 Rosmarinic Acid C4H low borderline
Lsic04G0003500.1 Rosmarinic Acid C4H low borderline