PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Gene Pathway Family Confidence Status
Lsic04G0006130.1 Rosmarinic Acid C4H medium pass
Lsic04G0006140.1 Rosmarinic Acid C4H medium pass
Lsic04G0006150.1 Rosmarinic Acid C4H low borderline
Lsic04G0006160.1 Rosmarinic Acid C4H low borderline
Lsic04G0006170.1 Rosmarinic Acid C4H low borderline
Lsic04G0006180.1 Rosmarinic Acid C4H low borderline
Lsic04G0006190.1 Rosmarinic Acid C4H low borderline
Lsic04G0006200.1 Rosmarinic Acid C4H low borderline
Lsic04G0006210.1 Rosmarinic Acid C4H low borderline
Lsic04G0006220.1 Rosmarinic Acid C4H low borderline
Lsic04G0006230.1 Rosmarinic Acid C4H low borderline
Lsic04G0006240.1 Rosmarinic Acid C4H low borderline
Lsic04G0006250.1 Rosmarinic Acid C4H low borderline
Lsic04G0006790.1 Rosmarinic Acid C4H low borderline
Lsic04G0012090.1 Rosmarinic Acid C4H low borderline
Lsic04G0014190.1 Rosmarinic Acid C4H low borderline
Lsic04G0015050.1 Rosmarinic Acid C4H low borderline
Lsic04G0015060.1 Rosmarinic Acid C4H low borderline
Lsic04G0015100.1 Rosmarinic Acid C4H medium pass
Lsic04G0015110.1 Rosmarinic Acid C4H medium pass
Lsic04G0015630.1 Rosmarinic Acid C4H low borderline
Lsic04G0016010.1 Rosmarinic Acid C4H low borderline
Lsic04G0016080.1 Rosmarinic Acid C4H low borderline
Lsic04G0016090.1 Rosmarinic Acid C4H low borderline
Lsic04G0016100.1 Rosmarinic Acid C4H low borderline
Lsic04G0016120.1 Rosmarinic Acid C4H low borderline
Lsic04G0016150.1 Rosmarinic Acid C4H medium pass
Lsic04G0016160.1 Rosmarinic Acid C4H medium pass
Lsic04G0016170.1 Rosmarinic Acid C4H low borderline
Lsic04G0016180.1 Rosmarinic Acid C4H low borderline
Lsic04G0016190.1 Rosmarinic Acid C4H low borderline
Lsic04G0016200.1 Rosmarinic Acid C4H medium pass
Lsic04G0016210.1 Rosmarinic Acid C4H low borderline
Lsic04G0016220.1 Rosmarinic Acid C4H medium pass
Lsic04G0016230.1 Rosmarinic Acid C4H low borderline
Lsic04G0016240.1 Rosmarinic Acid C4H medium pass
Lsic04G0016250.1 Rosmarinic Acid C4H low borderline
Lsic04G0016260.1 Rosmarinic Acid C4H low borderline
Lsic04G0016270.1 Rosmarinic Acid C4H low borderline
Lsic04G0016290.1 Rosmarinic Acid C4H low borderline
Lsic04G0016300.1 Rosmarinic Acid C4H low borderline
Lsic04G0016450.1 Rosmarinic Acid C4H low borderline
Lsic04G0016460.1 Rosmarinic Acid C4H low borderline
Lsic04G0016470.1 Rosmarinic Acid C4H low borderline
Lsic04G0019570.1 Rosmarinic Acid C4H low borderline
Lsic04G0019580.1 Rosmarinic Acid C4H low borderline
Lsic04G0019600.1 Rosmarinic Acid C4H low borderline
Lsic04G0019610.1 Rosmarinic Acid C4H low borderline
Lsic04G0023680.1 Rosmarinic Acid C4H low borderline
Lsic05G0000630.1 Rosmarinic Acid C4H low borderline