PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Lsic05G0000640.1 Rosmarinic Acid C4H low borderline
Lsic05G0000660.1 Rosmarinic Acid C4H low borderline
Lsic05G0003830.1 Rosmarinic Acid C4H low borderline
Lsic05G0005560.1 Rosmarinic Acid C4H low borderline
Lsic05G0007430.1 Rosmarinic Acid C4H low borderline
Lsic05G0008060.1 Rosmarinic Acid C4H low borderline
Lsic05G0010630.1 Rosmarinic Acid C4H medium pass
Lsic05G0010640.1 Rosmarinic Acid C4H low borderline
Lsic05G0010650.1 Rosmarinic Acid C4H medium pass
Lsic05G0019140.1 Rosmarinic Acid C4H low borderline
Lsic05G0019840.1 Rosmarinic Acid C4H low borderline
Lsic05G0021280.1 Rosmarinic Acid C4H low borderline
Lsic06G0003160.1 Rosmarinic Acid C4H low borderline
Lsic06G0005580.1 Rosmarinic Acid C4H low borderline
Lsic06G0005590.1 Rosmarinic Acid C4H low borderline
Lsic06G0005600.1 Rosmarinic Acid C4H low borderline
Lsic06G0005630.1 Rosmarinic Acid C4H low borderline
Lsic06G0005640.1 Rosmarinic Acid C4H low borderline
Lsic06G0005650.1 Rosmarinic Acid C4H low borderline
Lsic06G0005660.1 Rosmarinic Acid C4H low borderline
Lsic06G0005670.1 Rosmarinic Acid C4H low borderline
Lsic06G0006510.1 Rosmarinic Acid C4H low borderline
Lsic06G0009380.1 Rosmarinic Acid C4H low borderline
Lsic06G0012570.1 Rosmarinic Acid C4H low borderline
Lsic06G0014210.1 Rosmarinic Acid C4H low borderline
Lsic06G0015910.1 Rosmarinic Acid C4H medium pass
Lsic07G0002050.1 Rosmarinic Acid C4H low borderline
Lsic07G0002250.1 Rosmarinic Acid C4H medium pass
Lsic07G0006240.1 Rosmarinic Acid C4H low borderline
Lsic07G0006250.1 Rosmarinic Acid C4H medium pass
Lsic07G0006680.1 Rosmarinic Acid C4H medium pass
Lsic07G0007760.1 Rosmarinic Acid C4H low borderline
Lsic07G0007900.1 Rosmarinic Acid C4H low borderline
Lsic07G0012200.1 Rosmarinic Acid C4H low borderline
Lsic07G0012210.1 Rosmarinic Acid C4H low borderline
Lsic07G0012220.1 Rosmarinic Acid C4H low borderline
Lsic07G0014740.1 Rosmarinic Acid C4H low borderline
Lsic08G0006590.1 Rosmarinic Acid C4H medium pass
Lsic08G0009030.1 Rosmarinic Acid C4H low borderline
Lsic08G0013780.1 Rosmarinic Acid C4H low borderline
Lsic08G0014730.1 Rosmarinic Acid C4H low borderline
Lsic08G0015090.1 Rosmarinic Acid C4H low borderline
Lsic09G0000550.1 Rosmarinic Acid C4H low borderline
Lsic09G0003390.1 Rosmarinic Acid C4H low borderline
Lsic09G0003470.1 Rosmarinic Acid C4H medium pass
Lsic09G0003480.1 Rosmarinic Acid C4H medium pass
Lsic09G0003490.1 Rosmarinic Acid C4H medium pass
Lsic09G0003500.1 Rosmarinic Acid C4H low borderline
Lsic09G0003510.1 Rosmarinic Acid C4H low borderline
Lsic09G0003520.1 Rosmarinic Acid C4H low borderline