PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold420266290.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold4300273250.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold430269850.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold430272090.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold4610281640.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold4640289780.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold4900303040.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold4980303930.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold500304500.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold500304510.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5050306870.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5110309420.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5110310020.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5240311980.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5400314980.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5400315240.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold570324020.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold5870328130.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6040332900.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6050335480.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6170340400.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6290343030.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6300344060.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6740357070.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold6800357610.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7010361210.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7010361230.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7010361630.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7010362320.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7010362330.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7110364610.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7110364630.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7220366040.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7340369010.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7400369940.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7650378060.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold7650378070.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold8580394310.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold8980408240.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold8980408970.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold9060415840.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold9150417790.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold9170419820.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold9240422170.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold9240422180.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold960426180.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold960426190.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold960426200.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold960426730.1 Steroid BR6OX2/CYP85A2 low borderline
Lusiscaffold9770428590.1 Steroid BR6OX2/CYP85A2 low borderline