PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2990
Candidate Protein Records
2479
Pathway-Level Records
5917
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
FexcContig139300040870.1 Terpenoid HDR/IspH medium pass
FexcContig16760062840.1 Terpenoid HDR/IspH high pass
FexcContig24940124650.1 Terpenoid HDR/IspH medium pass
FexcContig30860162490.1 Terpenoid HDR/IspH high pass
FexcContig4210221180.1 Terpenoid HDR/IspH high pass
FexcContig561530275860.1 Terpenoid HDR/IspH high pass
FexcContig775590338140.1 Terpenoid HDR/IspH medium pass
FexcContig16350059800.1 Terpenoid HDS/IspG low borderline
FexcContig17110065810.1 Terpenoid HDS/IspG high pass
FexcContig39010206240.1 Terpenoid HDS/IspG high pass
FexcContig39010206240.2 Terpenoid HDS/IspG high pass
FexcContig100010001400.1 Terpenoid HMGR medium pass
FexcContig100010001400.2 Terpenoid HMGR medium pass
FexcContig20800095290.1 Terpenoid HMGR medium pass
FexcContig2930154090.1 Terpenoid HMGR medium pass
FexcContig34460182660.1 Terpenoid HMGR low borderline
FexcContig36480193480.1 Terpenoid HMGR medium pass
FexcContig40720214110.1 Terpenoid HMGR medium pass
FexcContig58610285390.1 Terpenoid HMGR medium pass
FexcContig795670342390.1 Terpenoid HMGR medium pass
FexcContig19410084090.1 Terpenoid HMGS high pass
FexcContig19410084090.2 Terpenoid HMGS high pass
FexcContig27790143720.1 Terpenoid HMGS high pass
FexcContig28340147790.1 Terpenoid HMGS high pass
FexcContig28540148840.1 Terpenoid HMGS medium pass
FexcContig3290174330.1 Terpenoid HMGS high pass
FexcContig33930179140.1 Terpenoid HMGS low borderline
FexcContig33930179140.2 Terpenoid HMGS low borderline
FexcContig66020308960.1 Terpenoid HMGS low borderline
FexcContig24660122830.1 Terpenoid IDI low borderline
FexcContig24660122840.1 Terpenoid IDI medium pass
FexcContig4410228330.1 Terpenoid IDI medium pass
FexcContig33150175640.1 Terpenoid MCT/IspD high pass
FexcContig40320212510.1 Terpenoid MCT/IspD low borderline
FexcContig39400208150.1 Terpenoid MDS/IspF high pass
FexcContig10730011420.1 Terpenoid MVD low borderline
FexcContig15030049640.1 Terpenoid MVD medium pass
FexcContig15030049670.1 Terpenoid MVD low borderline
FexcContig1660061570.1 Terpenoid MVD low borderline
FexcContig23630115530.1 Terpenoid MVD medium pass
FexcContig6490305910.1 Terpenoid MVD low borderline
FexcContig8940367470.1 Terpenoid MVD medium pass
FexcContig13190033040.1 Terpenoid MVK low borderline
FexcContig14980049050.1 Terpenoid MVK low borderline
FexcContig20690094700.1 Terpenoid MVK low borderline
FexcContig25140126320.1 Terpenoid MVK medium pass
FexcContig46810239230.1 Terpenoid MVK low borderline
FexcContig7710337010.1 Terpenoid MVK medium pass
FexcContig37350197870.1 Terpenoid PMK medium pass
FexcContig44930231770.1 Terpenoid PMK medium pass