Fraxinus excelsior (fraxinus_excelsior)
Imported from atlas release summary for Fraxinus excelsior.
2990
Candidate Protein Records
2479
Pathway-Level Records
5917
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5917
Family-Level Calls
BAHD
6.49%
C4H
5.86%
C3'H/CYP98A
5.44%
UGT
3.77%
IFS
3.67%
POD
3.5%
UFGT
3.41%
7DLGT
3.38%
Other Families
64.48%
More Families (95)
T3O
198
3.35%
4CL
186
3.14%
CYP76
181
3.06%
F3H
169
2.86%
NMT
150
2.54%
DWF4/CYP90B1
142
2.4%
CAD
136
2.3%
SMT1/SMT2/SMT3
121
2.04%
STR
111
1.88%
CODM/T6ODM
111
1.88%
F3'H/CYP75B
111
1.88%
CYP71
98
1.66%
CAS
88
1.49%
TPS
87
1.47%
BR6OX2/CYP85A2
85
1.44%
GES
78
1.32%
IFR
77
1.3%
LAC
73
1.23%
GS
72
1.22%
H6H
72
1.22%
SGD
68
1.15%
CYP90D1
63
1.06%
TRI/TRII
56
0.95%
CSE
50
0.85%
RAS
50
0.85%
T16H
45
0.76%
PMT
43
0.73%
SLS
42
0.71%
BBE
41
0.69%
IO
41
0.69%
TAT
39
0.66%
HCT
38
0.64%
PYKS
37
0.63%
ANR
37
0.63%
7DLH
36
0.61%
PAL
36
0.61%
NCS
34
0.57%
CPD/CYP90A1
34
0.57%
CCR
33
0.56%
CYP51G1
31
0.52%
G8O/G8H
30
0.51%
FNS
29
0.49%
COMT
27
0.46%
F5H/CYP84A
27
0.46%
GGPPS
25
0.42%
F3'5'H/CYP75A
24
0.41%
CPR
22
0.37%
BR6OX1/CYP85A1
21
0.35%
DFR
20
0.34%
16OMT
19
0.32%
8HGO
19
0.32%
CNMT
19
0.32%
ANS/LDOX
19
0.32%
AACT
19
0.32%
SMO1/SMO2
18
0.3%
FPPS
18
0.3%
SQS/FDFT1
16
0.27%
COR
14
0.24%
SQE
14
0.24%
MPO
12
0.2%
LAMT
12
0.2%
ISY
11
0.19%
DXS
11
0.19%
CCoAOMT
10
0.17%
DXR
10
0.17%
CYP719
9
0.15%
HPPR
9
0.15%
HMGR
9
0.15%
HMGS
9
0.15%
CHI
8
0.14%
CHS
8
0.14%
TDC
7
0.12%
DET2
7
0.12%
ROT3/CYP90C1
7
0.12%
MVD
7
0.12%
HDR/IspH
7
0.12%
TYDC_DDC
6
0.1%
MVK
6
0.1%
ADC
5
0.08%
DWF1
5
0.08%
CMK/IspE
4
0.07%
HDS/IspG
4
0.07%
CYP80B1
3
0.05%
XMT_MXMT_DXMT
3
0.05%
FK
3
0.05%
DWF5
3
0.05%
HYD1
3
0.05%
CPI1
3
0.05%
IDI
3
0.05%
PMK
3
0.05%
FLS
2
0.03%
DWF7
2
0.03%
MCT/IspD
2
0.03%
CYP80F1
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 749 | 20 | BAHD (302) | View species results |
| Alkaloid pathway | 573 | 21 | 7DLGT (101) | View species results |
| Phenylpropanoid pathway | 470 | 12 | POD (198) | View species results |
| Flavonoid pathway | 280 | 10 | UFGT (183) | View species results |
| Rosmarinic acid pathway | 206 | 7 | C4H (90) | View species results |
| Steroid pathway | 201 | 12 | SMT1/SMT2/SMT3 (78) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2115 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 472 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| FexcContig206480094400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig2090095890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig2140099590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig2140099590.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig2170101830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig2320112570.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig2320112570.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig23630115550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig24690123020.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig24690123020.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig25860131870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig26690136600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig26690136610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig270138510.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig27600142280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig2780143800.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig28670149620.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig28800150680.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig29340154360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig29970157460.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig29970157470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig29970157470.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig3130164800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig31930168280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig32050168980.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig32050168980.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig34070180040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig34070180050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig34070180050.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig3460183430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36220191730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36220191730.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36220191730.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig36230191960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig37900200460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig39490208370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig4290224080.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig4290224080.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig47050240450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig4900247630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig4900247640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig497590250450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig49840250910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig5020252410.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig5020252410.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig50400253140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig50400253140.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig52170259940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FexcContig5240260850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FexcContig52470261280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |