PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
FexcContig5500271110.1 Alkaloid 7DLGT low borderline
FexcContig5500271120.1 Alkaloid 7DLGT medium pass
FexcContig56360277010.1 Alkaloid 7DLGT low borderline
FexcContig56450277260.1 Alkaloid 7DLGT medium pass
FexcContig5690278820.1 Alkaloid 7DLGT low borderline
FexcContig5690278840.1 Alkaloid 7DLGT medium pass
FexcContig5690278840.2 Alkaloid 7DLGT medium pass
FexcContig58000283490.1 Alkaloid 7DLGT high pass
FexcContig590286890.1 Alkaloid 7DLGT medium pass
FexcContig593920288770.1 Alkaloid 7DLGT high pass
FexcContig59480289200.1 Alkaloid 7DLGT medium pass
FexcContig59620289720.1 Alkaloid 7DLGT medium pass
FexcContig5970290110.1 Alkaloid 7DLGT low borderline
FexcContig601730292320.1 Alkaloid 7DLGT medium pass
FexcContig6070294090.1 Alkaloid 7DLGT low borderline
FexcContig6100295460.1 Alkaloid 7DLGT medium pass
FexcContig61420296500.1 Alkaloid 7DLGT medium pass
FexcContig619620297650.1 Alkaloid 7DLGT high pass
FexcContig623040298400.1 Alkaloid 7DLGT low borderline
FexcContig66130309200.1 Alkaloid 7DLGT high pass
FexcContig6660310310.1 Alkaloid 7DLGT high pass
FexcContig6750312790.1 Alkaloid 7DLGT low borderline
FexcContig6780313350.1 Alkaloid 7DLGT low borderline
FexcContig6780313350.2 Alkaloid 7DLGT medium pass
FexcContig68040314060.1 Alkaloid 7DLGT high pass
FexcContig6820314560.1 Alkaloid 7DLGT low borderline
FexcContig68600315790.1 Alkaloid 7DLGT low borderline
FexcContig6940317700.1 Alkaloid 7DLGT low borderline
FexcContig6940317710.1 Alkaloid 7DLGT low borderline
FexcContig6940317720.1 Alkaloid 7DLGT low borderline
FexcContig69550318010.1 Alkaloid 7DLGT low borderline
FexcContig697110318190.1 Alkaloid 7DLGT medium pass
FexcContig70180319880.1 Alkaloid 7DLGT medium pass
FexcContig7030320210.1 Alkaloid 7DLGT low borderline
FexcContig70940322030.1 Alkaloid 7DLGT high pass
FexcContig71900324320.1 Alkaloid 7DLGT medium pass
FexcContig74160329600.1 Alkaloid 7DLGT low borderline
FexcContig74660330510.1 Alkaloid 7DLGT low borderline
FexcContig760333660.1 Alkaloid 7DLGT low borderline
FexcContig770336570.1 Alkaloid 7DLGT low borderline
FexcContig772770337620.1 Alkaloid 7DLGT high pass
FexcContig782650339720.1 Alkaloid 7DLGT high pass
FexcContig788380340870.1 Alkaloid 7DLGT high pass
FexcContig788380340870.2 Alkaloid 7DLGT high pass
FexcContig78990341270.1 Alkaloid 7DLGT low borderline
FexcContig790341350.1 Alkaloid 7DLGT low borderline
FexcContig80790345910.1 Alkaloid 7DLGT high pass
FexcContig822430349880.1 Alkaloid 7DLGT low borderline
FexcContig83450352670.1 Alkaloid 7DLGT low borderline
FexcContig83660353040.1 Alkaloid 7DLGT medium pass