PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
FexcContig5070253930.1 Rosmarinic Acid C4H medium pass
FexcContig50900254630.1 Rosmarinic Acid C4H medium pass
FexcContig5110255350.1 Rosmarinic Acid C4H low borderline
FexcContig51180255650.1 Rosmarinic Acid C4H medium pass
FexcContig52750262420.1 Rosmarinic Acid C4H medium pass
FexcContig52750262430.1 Rosmarinic Acid C4H low borderline
FexcContig53210264060.1 Rosmarinic Acid C4H low borderline
FexcContig5340264490.1 Rosmarinic Acid C4H medium pass
FexcContig54440268650.1 Rosmarinic Acid C4H medium pass
FexcContig550690271440.1 Rosmarinic Acid C4H low borderline
FexcContig550690271440.2 Rosmarinic Acid C4H medium pass
FexcContig558580274700.1 Rosmarinic Acid C4H low borderline
FexcContig5590274850.1 Rosmarinic Acid C4H low borderline
FexcContig56550277600.1 Rosmarinic Acid C4H low borderline
FexcContig56550277620.1 Rosmarinic Acid C4H medium pass
FexcContig57170279920.1 Rosmarinic Acid C4H low borderline
FexcContig57320280560.1 Rosmarinic Acid C4H low borderline
FexcContig58040283630.1 Rosmarinic Acid C4H low borderline
FexcContig58790285990.1 Rosmarinic Acid C4H medium pass
FexcContig58880286290.1 Rosmarinic Acid C4H low borderline
FexcContig58880286300.1 Rosmarinic Acid C4H low borderline
FexcContig59020287180.1 Rosmarinic Acid C4H low borderline
FexcContig59410288970.1 Rosmarinic Acid C4H low borderline
FexcContig59410288970.2 Rosmarinic Acid C4H low borderline
FexcContig59540289410.1 Rosmarinic Acid C4H medium pass
FexcContig59660289810.1 Rosmarinic Acid C4H low borderline
FexcContig59660289810.2 Rosmarinic Acid C4H low borderline
FexcContig59660289820.1 Rosmarinic Acid C4H low borderline
FexcContig60040291980.1 Rosmarinic Acid C4H low borderline
FexcContig60280292720.1 Rosmarinic Acid C4H low borderline
FexcContig60291510.1 Rosmarinic Acid C4H medium pass
FexcContig60291520.1 Rosmarinic Acid C4H medium pass
FexcContig60291530.1 Rosmarinic Acid C4H medium pass
FexcContig60440293180.1 Rosmarinic Acid C4H low borderline
FexcContig60440293180.2 Rosmarinic Acid C4H low borderline
FexcContig62450298830.1 Rosmarinic Acid C4H low borderline
FexcContig6270299480.1 Rosmarinic Acid C4H low borderline
FexcContig6310300770.1 Rosmarinic Acid C4H medium pass
FexcContig6350302250.1 Rosmarinic Acid C4H low borderline
FexcContig636810302770.1 Rosmarinic Acid C4H low borderline
FexcContig65110306750.1 Rosmarinic Acid C4H low borderline
FexcContig6550307670.1 Rosmarinic Acid C4H low borderline
FexcContig65680308120.1 Rosmarinic Acid C4H medium pass
FexcContig65990308720.1 Rosmarinic Acid C4H low borderline
FexcContig663820309700.1 Rosmarinic Acid C4H low borderline
FexcContig66480309960.1 Rosmarinic Acid C4H low borderline
FexcContig67120311850.1 Rosmarinic Acid C4H medium pass
FexcContig68500315410.1 Rosmarinic Acid C4H low borderline
FexcContig689200316670.1 Rosmarinic Acid C4H low borderline
FexcContig6920317280.1 Rosmarinic Acid C4H low borderline