PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PITA_000094206-RA Phenylpropanoid 4CL medium pass
PITA_000094236-RA Phenylpropanoid 4CL medium pass
PITA_000094237-RA Phenylpropanoid 4CL medium pass
PITA_000094570-RA Phenylpropanoid 4CL low borderline
PITA_000094572-RA Phenylpropanoid 4CL medium pass
PITA_000094740-RA Phenylpropanoid 4CL medium pass
PITA_000094916-RA Phenylpropanoid 4CL medium pass
PITA_000095197-RA Phenylpropanoid 4CL medium pass
PITA_000095205-RA Phenylpropanoid 4CL medium pass
PITA_000095211-RA Phenylpropanoid 4CL medium pass
PITA_000095658-RA Phenylpropanoid 4CL medium pass
PITA_000095841-RA Phenylpropanoid 4CL medium pass
PITA_000096008-RA Phenylpropanoid 4CL medium pass
PITA_000096053-RA Phenylpropanoid 4CL medium pass
PITA_000096217-RA Phenylpropanoid 4CL medium pass
PITA_000096560-RA Phenylpropanoid 4CL medium pass
PITAhm_000285-RA Phenylpropanoid 4CL low borderline
PITAhm_001076-RA Phenylpropanoid 4CL medium pass
PITAhm_001286-RA Phenylpropanoid 4CL low borderline
PITAhm_002474-RA Phenylpropanoid 4CL medium pass
PITAhm_003004-RA Phenylpropanoid 4CL medium pass
PITAhm_003354-RA Phenylpropanoid 4CL medium pass
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Phenylpropanoid C3'H/CYP98A medium borderline
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Phenylpropanoid C3'H/CYP98A medium borderline
5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
5A_all_NT_comp98714_c0_seq3|m.38113.mrna1 Phenylpropanoid C3'H/CYP98A low borderline
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Phenylpropanoid C3'H/CYP98A medium pass
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
6A_I20_VO_L_989_T_15/28|m.55970.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
6A_all_VO_L_40862_T_24/27|m.54451.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000000196-RA Phenylpropanoid C3'H/CYP98A low borderline
PITA_000000241-RA Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000000303-RA Phenylpropanoid C3'H/CYP98A low borderline
PITA_000000461-RA Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000000462-RA Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000000609-RA Phenylpropanoid C3'H/CYP98A low borderline
PITA_000000685-RA Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000000727-RA Phenylpropanoid C3'H/CYP98A low borderline
PITA_000000899-RA Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000000975-RA Phenylpropanoid C3'H/CYP98A medium borderline
PITA_000001011-RA Phenylpropanoid C3'H/CYP98A low borderline
PITA_000002318-RA Phenylpropanoid C3'H/CYP98A low borderline