Pinus taeda (pinus_taeda)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%

Family Distribution

12692 Family-Level Calls

C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%

Other Families 63.32%

More Families (98)

UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	1469	18	UGT (484)	View species results
Phenylpropanoid pathway	1259	13	POD (460)	View species results
Alkaloid pathway	1046	30	7DLGT (246)	View species results
Flavonoid pathway	799	16	UFGT (341)	View species results
Rosmarinic acid pathway	408	7	4CL (161)	View species results
Steroid pathway	281	16	CAS (195)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	4571	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	737	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
PITA_000079303-RA	Phenylpropanoid	PAL	low	borderline	PAL__00008__sp_Q8VXG7_PALY_MAIZE
PITA_000079629-RA	Phenylpropanoid	PAL	high	pass	PAL__00006__sp_Q68G84_PAM_TAXCH
PITA_000080150-RA	Phenylpropanoid	PAL	medium	pass	PAL__00001__sp_P24481_PAL1_PETCR
PITA_000080473-RA	Phenylpropanoid	PAL	high	pass	PAL__00006__sp_Q68G84_PAM_TAXCH
PITA_000082179-RA	Phenylpropanoid	PAL	high	pass	PAL__00007__sp_Q6GZ04_PAM_TAXCA
PITA_000086462-RA	Phenylpropanoid	PAL	high	pass	PAL__00006__sp_Q68G84_PAM_TAXCH
PITA_000093606-RA	Phenylpropanoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
PITA_000094991-RA	Phenylpropanoid	PAL	medium	pass	PAL__00005__sp_Q50EX7_PAL1_PETHY
PITA_000094992-RA	Phenylpropanoid	PAL	high	pass	PAL__00009__sp_Q9SS45_PAL4_ARATH
PITA_000095146-RA	Phenylpropanoid	PAL	medium	pass	PAL__00007__sp_Q6GZ04_PAM_TAXCA
PITA_000095762-RA	Phenylpropanoid	PAL	medium	pass	PAL__00006__sp_Q68G84_PAM_TAXCH
PITA_000096539-RA	Phenylpropanoid	PAL	medium	pass	PAL__00005__sp_Q50EX7_PAL1_PETHY
PITA_000096540-RA	Phenylpropanoid	PAL	high	pass	PAL__00005__sp_Q50EX7_PAL1_PETHY
PITA_000096541-RA	Phenylpropanoid	PAL	medium	pass	PAL__00003__sp_P45724_PAL2_ARATH
3A_all_VO_L_29631_T_11/24\|m.29909.mrna2	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000000014-RA	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
PITA_000000024-RA	Phenylpropanoid	POD	medium	pass	POD__00024__sp_Q9SCX8_PPA17_ARATH
PITA_000000041-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000000065-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000000955-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000000964-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000002200-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000002516-RA	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH
PITA_000003174-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000003432-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000003611-RA	Phenylpropanoid	POD	low	borderline	POD__00026__sp_Q9XEX2_PRX2B_ARATH
PITA_000004614-RA	Phenylpropanoid	POD	medium	pass	POD__00011__sp_Q05431_APX1_ARATH
PITA_000006883-RA	Phenylpropanoid	POD	low	borderline	POD__00007__sp_P0C5C9_REHYA_ORYSJ
PITA_000006884-RA	Phenylpropanoid	POD	low	borderline	POD__00008__sp_P52574_REHY_SYNRU
PITA_000007028-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000007029-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000007030-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000007061-RA	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
PITA_000007252-RA	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
PITA_000007375-RA	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
PITA_000007376-RA	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
PITA_000007550-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000007786-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000007862-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000007864-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000008331-RA	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
PITA_000008713-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000008714-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000008719-RA	Phenylpropanoid	POD	low	borderline	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000009670-RA	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
PITA_000009671-RA	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
PITA_000009673-RA	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
PITA_000009675-RA	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
PITA_000009981-RA	Phenylpropanoid	POD	low	borderline	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000010387-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE