PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PITA_000050215-RA Alkaloid BBE low borderline
PITA_000053798-RA Alkaloid BBE medium borderline
PITA_000056753-RA Alkaloid BBE medium borderline
PITA_000056755-RA Alkaloid BBE medium borderline
PITA_000058253-RA Alkaloid BBE low borderline
PITA_000058293-RA Alkaloid BBE medium borderline
PITA_000061097-RA Alkaloid BBE medium borderline
PITA_000062552-RA Alkaloid BBE medium borderline
PITA_000068221-RA Alkaloid BBE medium borderline
PITA_000071115-RA Alkaloid BBE medium borderline
PITA_000071490-RA Alkaloid BBE medium borderline
PITA_000072414-RA Alkaloid BBE low borderline
PITA_000079914-RA Alkaloid BBE medium borderline
PITA_000080534-RA Alkaloid BBE medium borderline
PITA_000080834-RA Alkaloid BBE medium borderline
PITA_000081277-RA Alkaloid BBE medium borderline
PITA_000085767-RA Alkaloid BBE medium borderline
PITA_000086022-RA Alkaloid BBE medium borderline
PITA_000087266-RA Alkaloid BBE medium borderline
PITA_000092885-RA Alkaloid BBE low borderline
PITA_000094852-RA Alkaloid BBE medium borderline
PITA_000095110-RA Alkaloid BBE medium borderline
PITA_000096564-RA Alkaloid BBE medium borderline
PITA_000096603-RA Alkaloid BBE medium borderline
PITAhm_000270-RA Alkaloid BBE medium borderline
1A_all_VO_L_11204_T_36/65|m.2451.mrna2 Alkaloid CNMT medium pass
PITA_000004481-RA Alkaloid CNMT low borderline
PITA_000007776-RA Alkaloid CNMT low borderline
PITA_000023849-RA Alkaloid CNMT low borderline
PITA_000025212-RA Alkaloid CNMT low borderline
PITA_000028683-RA Alkaloid CNMT low borderline
PITA_000046916-RA Alkaloid CNMT low borderline
PITA_000051588-RA Alkaloid CNMT medium borderline
PITA_000052589-RA Alkaloid CNMT low borderline
PITA_000058403-RA Alkaloid CNMT low borderline
PITA_000059752-RA Alkaloid CNMT low borderline
PITA_000063445-RA Alkaloid CNMT low borderline
PITA_000081240-RA Alkaloid CNMT low borderline
PITA_000089500-RA Alkaloid CNMT low borderline
PITA_000091736-RA Alkaloid CNMT low borderline
PITA_000093411-RA Alkaloid CNMT low borderline
PITAhm_001171-RA Alkaloid CNMT medium pass
1A_I5_VO_L_6720_T_12/20|m.10219.mrna2 Alkaloid CODM/T6ODM low borderline
3A_all_NT_comp89573_c0_seq1|m.27450.mrna1 Alkaloid CODM/T6ODM medium borderline
PITA_000000566-RA Alkaloid CODM/T6ODM medium borderline
PITA_000001633-RA Alkaloid CODM/T6ODM medium borderline
PITA_000001728-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002111-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002117-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002509-RA Alkaloid CODM/T6ODM medium borderline