PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PITA_000090029-RA Alkaloid NMT low borderline
PITA_000090933-RA Alkaloid NMT medium pass
PITA_000090934-RA Alkaloid NMT medium pass
PITA_000092604-RA Alkaloid NMT medium borderline
PITA_000094078-RA Alkaloid NMT medium borderline
PITA_000094913-RA Alkaloid NMT medium pass
PITA_000095021-RA Alkaloid NMT medium pass
PITA_000095489-RA Alkaloid NMT medium borderline
PITA_000095905-RA Alkaloid NMT low borderline
PITA_000096669-RA Alkaloid NMT medium pass
PITA_000096706-RA Alkaloid NMT low borderline
PITAhm_000098-RA Alkaloid NMT medium borderline
PITAhm_001137-RA Alkaloid NMT medium pass
PITAhm_002650-RA Alkaloid NMT low borderline
PITAhm_002667-RA Alkaloid NMT low borderline
PITAhm_002873-RA Alkaloid NMT low borderline
PITA_000004775-RA Alkaloid ODC low borderline
PITA_000013764-RA Alkaloid ODC medium pass
PITA_000013765-RA Alkaloid ODC medium pass
PITA_000030229-RA Alkaloid ODC low borderline
PITA_000039728-RA Alkaloid ODC medium pass
PITA_000039768-RA Alkaloid ODC medium pass
PITA_000039769-RA Alkaloid ODC medium pass
PITA_000041261-RA Alkaloid ODC medium pass
PITA_000044641-RA Alkaloid ODC medium pass
PITA_000059574-RA Alkaloid ODC medium pass
PITA_000064865-RA Alkaloid ODC medium pass
PITA_000073045-RA Alkaloid ODC medium pass
PITA_000081237-RA Alkaloid ODC medium pass
PITA_000084566-RA Alkaloid ODC medium pass
PITA_000085617-RA Alkaloid ODC medium pass
PITA_000085618-RA Alkaloid ODC low borderline
PITA_000091427-RA Alkaloid ODC medium pass
PITA_000092813-RA Alkaloid ODC medium pass
PITA_000093791-RA Alkaloid ODC medium pass
PITA_000095331-RA Alkaloid ODC medium pass
PITA_000095542-RA Alkaloid ODC medium pass
PITA_000095586-RA Alkaloid ODC medium pass
PITA_000095587-RA Alkaloid ODC medium pass
PITAhm_000362-RA Alkaloid ODC medium pass
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Alkaloid PMT medium pass
PITA_000000833-RA Alkaloid PMT medium pass
PITA_000001006-RA Alkaloid PMT medium pass
PITA_000002175-RA Alkaloid PMT medium pass
PITA_000002181-RA Alkaloid PMT low borderline
PITA_000006323-RA Alkaloid PMT medium pass
PITA_000009151-RA Alkaloid PMT low borderline
PITA_000011445-RA Alkaloid PMT medium pass
PITA_000014170-RA Alkaloid PMT medium pass
PITA_000016979-RA Alkaloid PMT medium pass