PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
PITA_000026653-RA Alkaloid 7DLGT low borderline
PITA_000026661-RA Alkaloid 7DLGT medium pass
PITA_000026969-RA Alkaloid 7DLGT low borderline
PITA_000027067-RA Alkaloid 7DLGT medium pass
PITA_000027068-RA Alkaloid 7DLGT low borderline
PITA_000027219-RA Alkaloid 7DLGT low borderline
PITA_000027927-RA Alkaloid 7DLGT medium pass
PITA_000029227-RA Alkaloid 7DLGT low borderline
PITA_000029274-RA Alkaloid 7DLGT low borderline
PITA_000029290-RA Alkaloid 7DLGT low borderline
PITA_000029615-RA Alkaloid 7DLGT medium pass
PITA_000029616-RA Alkaloid 7DLGT low borderline
PITA_000029617-RA Alkaloid 7DLGT low borderline
PITA_000029928-RA Alkaloid 7DLGT high pass
PITA_000029929-RA Alkaloid 7DLGT low borderline
PITA_000029931-RA Alkaloid 7DLGT medium pass
PITA_000030133-RA Alkaloid 7DLGT low borderline
PITA_000030740-RA Alkaloid 7DLGT low borderline
PITA_000031343-RA Alkaloid 7DLGT medium pass
PITA_000031665-RA Alkaloid 7DLGT high pass
PITA_000031732-RA Alkaloid 7DLGT low borderline
PITA_000031733-RA Alkaloid 7DLGT low borderline
PITA_000031861-RA Alkaloid 7DLGT medium pass
PITA_000031898-RA Alkaloid 7DLGT medium pass
PITA_000032390-RA Alkaloid 7DLGT low borderline
PITA_000032645-RA Alkaloid 7DLGT medium pass
PITA_000032646-RA Alkaloid 7DLGT medium pass
PITA_000032648-RA Alkaloid 7DLGT high pass
PITA_000033093-RA Alkaloid 7DLGT medium pass
PITA_000033548-RA Alkaloid 7DLGT medium pass
PITA_000033695-RA Alkaloid 7DLGT low borderline
PITA_000034018-RA Alkaloid 7DLGT low borderline
PITA_000034475-RA Alkaloid 7DLGT low borderline
PITA_000034478-RA Alkaloid 7DLGT medium pass
PITA_000034543-RA Alkaloid 7DLGT low borderline
PITA_000034544-RA Alkaloid 7DLGT high pass
PITA_000035081-RA Alkaloid 7DLGT medium pass
PITA_000035117-RA Alkaloid 7DLGT low borderline
PITA_000035124-RA Alkaloid 7DLGT low borderline
PITA_000035125-RA Alkaloid 7DLGT low borderline
PITA_000035134-RA Alkaloid 7DLGT medium pass
PITA_000035135-RA Alkaloid 7DLGT low borderline
PITA_000035359-RA Alkaloid 7DLGT medium pass
PITA_000035585-RA Alkaloid 7DLGT low borderline
PITA_000035655-RA Alkaloid 7DLGT medium pass
PITA_000035811-RA Alkaloid 7DLGT low borderline
PITA_000036072-RA Alkaloid 7DLGT low borderline
PITA_000036215-RA Alkaloid 7DLGT low borderline
PITA_000036982-RA Alkaloid 7DLGT low borderline
PITA_000037271-RA Alkaloid 7DLGT medium pass