PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
PITA_000048706-RA Alkaloid 7DLGT low borderline
PITA_000048810-RA Alkaloid 7DLGT high pass
PITA_000049147-RA Alkaloid 7DLGT low borderline
PITA_000049390-RA Alkaloid 7DLGT low borderline
PITA_000049394-RA Alkaloid 7DLGT low borderline
PITA_000049780-RA Alkaloid 7DLGT medium pass
PITA_000050251-RA Alkaloid 7DLGT low borderline
PITA_000050381-RA Alkaloid 7DLGT low borderline
PITA_000050777-RA Alkaloid 7DLGT medium pass
PITA_000050819-RA Alkaloid 7DLGT medium pass
PITA_000050841-RA Alkaloid 7DLGT low borderline
PITA_000050842-RA Alkaloid 7DLGT low borderline
PITA_000051383-RA Alkaloid 7DLGT medium pass
PITA_000051674-RA Alkaloid 7DLGT medium pass
PITA_000051707-RA Alkaloid 7DLGT medium pass
PITA_000051936-RA Alkaloid 7DLGT low borderline
PITA_000052139-RA Alkaloid 7DLGT low borderline
PITA_000052357-RA Alkaloid 7DLGT medium pass
PITA_000052622-RA Alkaloid 7DLGT low borderline
PITA_000052999-RA Alkaloid 7DLGT medium pass
PITA_000053205-RA Alkaloid 7DLGT high pass
PITA_000053323-RA Alkaloid 7DLGT low borderline
PITA_000053324-RA Alkaloid 7DLGT medium pass
PITA_000053325-RA Alkaloid 7DLGT low borderline
PITA_000053326-RA Alkaloid 7DLGT medium pass
PITA_000053327-RA Alkaloid 7DLGT low borderline
PITA_000053388-RA Alkaloid 7DLGT medium pass
PITA_000053735-RA Alkaloid 7DLGT low borderline
PITA_000054073-RA Alkaloid 7DLGT low borderline
PITA_000054124-RA Alkaloid 7DLGT low borderline
PITA_000054193-RA Alkaloid 7DLGT medium pass
PITA_000054420-RA Alkaloid 7DLGT medium pass
PITA_000055201-RA Alkaloid 7DLGT medium pass
PITA_000055321-RA Alkaloid 7DLGT medium pass
PITA_000055617-RA Alkaloid 7DLGT low borderline
PITA_000055675-RA Alkaloid 7DLGT medium pass
PITA_000055676-RA Alkaloid 7DLGT medium pass
PITA_000055775-RA Alkaloid 7DLGT high pass
PITA_000055978-RA Alkaloid 7DLGT medium pass
PITA_000056042-RA Alkaloid 7DLGT low borderline
PITA_000056245-RA Alkaloid 7DLGT low borderline
PITA_000056910-RA Alkaloid 7DLGT low borderline
PITA_000057220-RA Alkaloid 7DLGT low borderline
PITA_000057489-RA Alkaloid 7DLGT low borderline
PITA_000057514-RA Alkaloid 7DLGT low borderline
PITA_000057515-RA Alkaloid 7DLGT low borderline
PITA_000057878-RA Alkaloid 7DLGT medium pass
PITA_000057903-RA Alkaloid 7DLGT medium pass
PITA_000058443-RA Alkaloid 7DLGT medium pass
PITA_000058551-RA Alkaloid 7DLGT medium pass