PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 16OMT
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Gene Pathway Family Confidence Status
PITA_000072030-RA Alkaloid 16OMT medium borderline
PITA_000073071-RA Alkaloid 16OMT medium borderline
PITA_000075665-RA Alkaloid 16OMT medium borderline
PITA_000075984-RA Alkaloid 16OMT medium borderline
PITA_000076633-RA Alkaloid 16OMT medium borderline
PITA_000077306-RA Alkaloid 16OMT medium borderline
PITA_000077398-RA Alkaloid 16OMT medium borderline
PITA_000077991-RA Alkaloid 16OMT low borderline
PITA_000079751-RA Alkaloid 16OMT low borderline
PITA_000080349-RA Alkaloid 16OMT medium borderline
PITA_000080753-RA Alkaloid 16OMT medium borderline
PITA_000081289-RA Alkaloid 16OMT medium borderline
PITA_000082453-RA Alkaloid 16OMT medium borderline
PITA_000083650-RA Alkaloid 16OMT medium borderline
PITA_000084483-RA Alkaloid 16OMT medium borderline
PITA_000084573-RA Alkaloid 16OMT medium pass
PITA_000086737-RA Alkaloid 16OMT medium borderline
PITA_000088458-RA Alkaloid 16OMT medium borderline
PITA_000089184-RA Alkaloid 16OMT medium borderline
PITA_000090398-RA Alkaloid 16OMT medium borderline
PITA_000090500-RA Alkaloid 16OMT medium borderline
PITA_000090550-RA Alkaloid 16OMT low borderline
PITA_000092427-RA Alkaloid 16OMT medium borderline
PITA_000092585-RA Alkaloid 16OMT medium borderline
PITA_000093079-RA Alkaloid 16OMT medium borderline
PITA_000093949-RA Alkaloid 16OMT medium borderline
PITA_000094094-RA Alkaloid 16OMT medium borderline
PITA_000094189-RA Alkaloid 16OMT low borderline
PITA_000094799-RA Alkaloid 16OMT medium pass
PITAhm_000104-RA Alkaloid 16OMT medium borderline