PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
PITA_000039543-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000039814-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000041845-RA Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000042074-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042075-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042076-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042077-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042458-RA Rosmarinic Acid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000042615-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000043490-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000047041-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000047042-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000047043-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000047795-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000047804-RA Rosmarinic Acid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000048142-RA Rosmarinic Acid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
PITA_000048780-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000049377-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000049975-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000050416-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000050418-RA Rosmarinic Acid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000051705-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000052725-RA Rosmarinic Acid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
PITA_000054408-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000055602-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000056227-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000056228-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000057252-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000057253-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000057438-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000057952-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000057953-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058083-RA Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000058126-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058127-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058432-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058433-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058849-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000059213-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000059214-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000059215-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000059216-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000061370-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000062509-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000062511-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000062705-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000064532-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000066980-RA Rosmarinic Acid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000067598-RA Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000068327-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY