PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
PITA_000091328-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000091677-RA Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000091820-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000092156-RA Rosmarinic Acid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000093049-RA Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000093379-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000093380-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000094206-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094236-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094237-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094570-RA Rosmarinic Acid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000094572-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000094740-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094916-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000095197-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000095205-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000095211-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000095658-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000095841-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000096008-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000096053-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000096217-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000096560-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITAhm_000285-RA Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
PITAhm_001076-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITAhm_001286-RA Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
PITAhm_002474-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITAhm_003004-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITAhm_003354-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY