PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
PITA_000013356-RA Alkaloid 7DLGT high pass
PITA_000013681-RA Alkaloid 7DLGT medium pass
PITA_000014466-RA Alkaloid 7DLGT low borderline
PITA_000014467-RA Alkaloid 7DLGT low borderline
PITA_000014566-RA Alkaloid 7DLGT low borderline
PITA_000014574-RA Alkaloid 7DLGT low borderline
PITA_000014594-RA Alkaloid 7DLGT medium pass
PITA_000014676-RA Alkaloid 7DLGT low borderline
PITA_000015264-RA Alkaloid 7DLGT medium pass
PITA_000015764-RA Alkaloid 7DLGT medium pass
PITA_000015765-RA Alkaloid 7DLGT medium pass
PITA_000016479-RA Alkaloid 7DLGT medium pass
PITA_000016680-RA Alkaloid 7DLGT low borderline
PITA_000016681-RA Alkaloid 7DLGT low borderline
PITA_000016686-RA Alkaloid 7DLGT low borderline
PITA_000016714-RA Alkaloid 7DLGT low borderline
PITA_000016835-RA Alkaloid 7DLGT medium pass
PITA_000016837-RA Alkaloid 7DLGT low borderline
PITA_000016840-RA Alkaloid 7DLGT medium pass
PITA_000016841-RA Alkaloid 7DLGT low borderline
PITA_000017223-RA Alkaloid 7DLGT medium pass
PITA_000017645-RA Alkaloid 7DLGT low borderline
PITA_000018680-RA Alkaloid 7DLGT low borderline
PITA_000019307-RA Alkaloid 7DLGT high pass
PITA_000020009-RA Alkaloid 7DLGT low borderline
PITA_000020010-RA Alkaloid 7DLGT low borderline
PITA_000020213-RA Alkaloid 7DLGT medium pass
PITA_000020941-RA Alkaloid 7DLGT low borderline
PITA_000021187-RA Alkaloid 7DLGT low borderline
PITA_000021826-RA Alkaloid 7DLGT low borderline
PITA_000021881-RA Alkaloid 7DLGT low borderline
PITA_000021946-RA Alkaloid 7DLGT low borderline
PITA_000022084-RA Alkaloid 7DLGT low borderline
PITA_000022171-RA Alkaloid 7DLGT medium pass
PITA_000022172-RA Alkaloid 7DLGT medium pass
PITA_000022566-RA Alkaloid 7DLGT low borderline
PITA_000023662-RA Alkaloid 7DLGT low borderline
PITA_000023663-RA Alkaloid 7DLGT low borderline
PITA_000023706-RA Alkaloid 7DLGT medium pass
PITA_000023748-RA Alkaloid 7DLGT medium pass
PITA_000023761-RA Alkaloid 7DLGT medium pass
PITA_000024203-RA Alkaloid 7DLGT medium pass
PITA_000024207-RA Alkaloid 7DLGT low borderline
PITA_000024257-RA Alkaloid 7DLGT low borderline
PITA_000024258-RA Alkaloid 7DLGT medium pass
PITA_000024314-RA Alkaloid 7DLGT low borderline
PITA_000024316-RA Alkaloid 7DLGT high pass
PITA_000024317-RA Alkaloid 7DLGT high pass
PITA_000025329-RA Alkaloid 7DLGT medium pass
PITA_000026317-RA Alkaloid 7DLGT low borderline