PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLH
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Gene Pathway Family Confidence Status
PITA_000067982-RA Alkaloid 7DLH low borderline
PITA_000068179-RA Alkaloid 7DLH low borderline
PITA_000068990-RA Alkaloid 7DLH low borderline
PITA_000069268-RA Alkaloid 7DLH low borderline
PITA_000070298-RA Alkaloid 7DLH low borderline
PITA_000071715-RA Alkaloid 7DLH low borderline
PITA_000071969-RA Alkaloid 7DLH low borderline
PITA_000072890-RA Alkaloid 7DLH medium borderline
PITA_000072958-RA Alkaloid 7DLH low borderline
PITA_000073573-RA Alkaloid 7DLH low borderline
PITA_000074050-RA Alkaloid 7DLH low borderline
PITA_000074153-RA Alkaloid 7DLH medium borderline
PITA_000075005-RA Alkaloid 7DLH low borderline
PITA_000075114-RA Alkaloid 7DLH medium borderline
PITA_000076867-RA Alkaloid 7DLH low borderline
PITA_000077229-RA Alkaloid 7DLH medium borderline
PITA_000077798-RA Alkaloid 7DLH low borderline
PITA_000077801-RA Alkaloid 7DLH low borderline
PITA_000081074-RA Alkaloid 7DLH medium borderline
PITA_000082064-RA Alkaloid 7DLH medium borderline
PITA_000082129-RA Alkaloid 7DLH low borderline
PITA_000083049-RA Alkaloid 7DLH medium borderline
PITA_000084304-RA Alkaloid 7DLH medium borderline
PITA_000084995-RA Alkaloid 7DLH medium borderline
PITA_000084999-RA Alkaloid 7DLH low borderline
PITA_000087185-RA Alkaloid 7DLH medium pass
PITA_000087205-RA Alkaloid 7DLH low borderline
PITA_000088109-RA Alkaloid 7DLH low borderline
PITA_000088371-RA Alkaloid 7DLH low borderline
PITA_000089178-RA Alkaloid 7DLH low borderline
PITA_000091067-RA Alkaloid 7DLH low borderline
PITA_000091743-RA Alkaloid 7DLH medium borderline
PITA_000094681-RA Alkaloid 7DLH low borderline
PITA_000094701-RA Alkaloid 7DLH medium borderline
PITA_000095069-RA Alkaloid 7DLH low borderline
PITA_000095598-RA Alkaloid 7DLH medium borderline
PITA_000096156-RA Alkaloid 7DLH medium borderline
PITA_000096241-RA Alkaloid 7DLH low borderline
PITAhm_001669-RA Alkaloid 7DLH medium borderline