PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status
PITA_000048401-RA Alkaloid 8HGO medium borderline
PITA_000048545-RA Alkaloid 8HGO low borderline
PITA_000050125-RA Alkaloid 8HGO medium pass
PITA_000050142-RA Alkaloid 8HGO medium borderline
PITA_000051245-RA Alkaloid 8HGO medium pass
PITA_000052427-RA Alkaloid 8HGO medium borderline
PITA_000053217-RA Alkaloid 8HGO low borderline
PITA_000053314-RA Alkaloid 8HGO medium pass
PITA_000054472-RA Alkaloid 8HGO low borderline
PITA_000054623-RA Alkaloid 8HGO low borderline
PITA_000057504-RA Alkaloid 8HGO medium borderline
PITA_000059398-RA Alkaloid 8HGO medium pass
PITA_000059950-RA Alkaloid 8HGO medium borderline
PITA_000063334-RA Alkaloid 8HGO medium borderline
PITA_000063775-RA Alkaloid 8HGO medium pass
PITA_000063814-RA Alkaloid 8HGO low borderline
PITA_000065668-RA Alkaloid 8HGO low borderline
PITA_000069072-RA Alkaloid 8HGO medium pass
PITA_000070720-RA Alkaloid 8HGO low borderline
PITA_000071353-RA Alkaloid 8HGO low borderline
PITA_000072635-RA Alkaloid 8HGO low borderline
PITA_000072650-RA Alkaloid 8HGO low borderline
PITA_000074494-RA Alkaloid 8HGO medium pass
PITA_000078177-RA Alkaloid 8HGO medium borderline
PITA_000079159-RA Alkaloid 8HGO low borderline
PITA_000080460-RA Alkaloid 8HGO medium pass
PITA_000080680-RA Alkaloid 8HGO low borderline
PITA_000081581-RA Alkaloid 8HGO low borderline
PITA_000083898-RA Alkaloid 8HGO medium borderline
PITA_000084537-RA Alkaloid 8HGO low borderline
PITA_000087218-RA Alkaloid 8HGO low borderline
PITA_000087433-RA Alkaloid 8HGO low borderline
PITA_000090125-RA Alkaloid 8HGO medium borderline
PITA_000091646-RA Alkaloid 8HGO low borderline
PITAhm_000321-RA Alkaloid 8HGO medium borderline
PITAhm_000683-RA Alkaloid 8HGO medium borderline
PITAhm_002459-RA Alkaloid 8HGO low borderline
PITAhm_002582-RA Alkaloid 8HGO medium borderline
PITAhm_003311-RA Alkaloid 8HGO medium borderline