PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
PITA_000011445-RA Terpenoid BAHD medium pass BAHD__00031__sp_P0DO25_AT9_ACTDE
PITA_000011713-RA Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000011715-RA Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000012117-RA Terpenoid BAHD low borderline BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000012243-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000012484-RA Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000012570-RA Terpenoid BAHD low borderline BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
PITA_000012626-RA Terpenoid BAHD medium borderline BAHD__00044__sp_Q56WD9_THIK2_ARATH
PITA_000012808-RA Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
PITA_000013289-RA Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
PITA_000013290-RA Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
PITA_000013315-RA Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000014170-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000014313-RA Terpenoid BAHD medium pass BAHD__00044__sp_Q56WD9_THIK2_ARATH
PITA_000014608-RA Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
PITA_000014609-RA Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
PITA_000015406-RA Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
PITA_000015489-RA Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000015693-RA Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000016188-RA Terpenoid BAHD low borderline BAHD__00062__sp_Q93V61_LCAT3_ARATH
PITA_000016482-RA Terpenoid BAHD low borderline BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
PITA_000016583-RA Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
PITA_000016979-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000017479-RA Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000017482-RA Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000017795-RA Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
PITA_000018073-RA Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
PITA_000018074-RA Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
PITA_000018316-RA Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
PITA_000019120-RA Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
PITA_000019193-RA Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000019493-RA Terpenoid BAHD medium pass BAHD__00044__sp_Q56WD9_THIK2_ARATH
PITA_000019929-RA Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
PITA_000020196-RA Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
PITA_000020197-RA Terpenoid BAHD low borderline BAHD__00097__sp_Q9ZV87_NAPES_ARATH
PITA_000020228-RA Terpenoid BAHD low borderline BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
PITA_000020252-RA Terpenoid BAHD low borderline BAHD__00021__sp_K7K424_DAT2D_SOYBN
PITA_000020367-RA Terpenoid BAHD low borderline BAHD__00068__sp_Q9C533_ZDHC1_ARATH
PITA_000021000-RA Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
PITA_000021021-RA Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000021024-RA Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
PITA_000021027-RA Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000021157-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000021328-RA Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
PITA_000021460-RA Terpenoid BAHD medium pass BAHD__00053__sp_Q8GXU8_LPAT1_ARATH
PITA_000021818-RA Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
PITA_000022026-RA Terpenoid BAHD low borderline BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
PITA_000022156-RA Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
PITA_000022168-RA Terpenoid BAHD medium pass BAHD__00011__sp_A1A442_DGAT2_RICCO
PITA_000022432-RA Terpenoid BAHD low borderline BAHD__00012__sp_A1XWY7_CFAT_PETHY