Pinus taeda (pinus_taeda)
Imported from atlas release summary for Pinus taeda.
5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
5262
Candidate Genes
C4H
5.65%
C3'H/CYP98A
5.17%
UGT
4.84%
4CL
4.56%
CYP76
4.22%
BAHD
4.21%
POD
4.18%
7DLGT
3.84%
Other Families
63.32%
More Families (98)
UFGT
426
3.36%
IFS
424
3.34%
TPS
369
2.91%
F3H
301
2.37%
DWF4/CYP90B1
292
2.3%
CAD
273
2.15%
GES
258
2.03%
F3'H/CYP75B
253
1.99%
CAS
239
1.88%
BR6OX2/CYP85A2
234
1.84%
G8O/G8H
232
1.83%
LAC
227
1.79%
T3O
208
1.64%
H6H
200
1.58%
IFR
189
1.49%
T16H
183
1.44%
CODM/T6ODM
181
1.43%
IO
156
1.23%
NMT
151
1.19%
F3'5'H/CYP75A
138
1.09%
TRI/TRII
135
1.06%
SGD
134
1.06%
COMT
128
1.01%
HCT
118
0.93%
PAL
117
0.92%
STR
98
0.77%
SMT1/SMT2/SMT3
98
0.77%
FNS
96
0.76%
F5H/CYP84A
94
0.74%
PYKS
92
0.72%
8HGO
89
0.7%
7DLH
89
0.7%
RAS
85
0.67%
GS
84
0.66%
16OMT
80
0.63%
PMT
76
0.6%
SLS
75
0.59%
ANR
74
0.58%
HMGR
74
0.58%
ANS/LDOX
73
0.58%
DFR
69
0.54%
CYP90D1
69
0.54%
CHS
67
0.53%
CCR
64
0.5%
LAMT
60
0.47%
NCS
59
0.46%
CSE
54
0.43%
TAT
50
0.39%
CPD/CYP90A1
47
0.37%
GGPPS
43
0.34%
BR6OX1/CYP85A1
41
0.32%
CYP80B1
39
0.31%
ISY
38
0.3%
BBE
34
0.27%
CYP71
31
0.24%
XMT_MXMT_DXMT
28
0.22%
ADC
26
0.2%
ODC
24
0.19%
CHI
24
0.19%
FPPS
24
0.19%
CYP719
23
0.18%
COR
22
0.17%
6OMT_4OMT_SOMT
19
0.15%
CCoAOMT
18
0.14%
ROT3/CYP90C1
18
0.14%
CNMT
17
0.13%
MPO
15
0.12%
FLS
15
0.12%
DWF1
13
0.1%
DET2
12
0.09%
AACT
12
0.09%
CYP51G1
10
0.08%
CPR
9
0.07%
HDS/IspG
9
0.07%
IDI
9
0.07%
MVK
8
0.06%
HPPR
7
0.06%
DWF5
7
0.06%
CYP80F1
6
0.05%
CMK/IspE
6
0.05%
DXS
6
0.05%
TDC
4
0.03%
SQS/FDFT1
4
0.03%
SQE
4
0.03%
HYD1
3
0.02%
CPI1
3
0.02%
HDR/IspH
3
0.02%
HMGS
3
0.02%
MVD
3
0.02%
FK
2
0.02%
SMO1/SMO2
2
0.02%
DWF7
2
0.02%
DXR
2
0.02%
PMK
2
0.02%
MDS/IspF
2
0.02%
TYDC_DDC
1
0.01%
MCT/IspD
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1469 | 18 | UGT (484) | View species results |
| Phenylpropanoid pathway | 1259 | 13 | POD (460) | View species results |
| Alkaloid pathway | 1046 | 30 | 7DLGT (246) | View species results |
| Flavonoid pathway | 799 | 16 | UFGT (341) | View species results |
| Rosmarinic acid pathway | 408 | 7 | 4CL (161) | View species results |
| Steroid pathway | 281 | 16 | CAS (195) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4571 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 737 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| 1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 1A_all_VO_L_799_T_709/713|m.1521.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 2A_all_VO_L_10227_T_32/34|m.16145.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 2A_all_VO_L_20057_T_11/12|m.16808.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 3A_all_VO_L_45670_T_3/7|m.29968.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 3A_all_VO_L_45670_T_3/7|m.29968.mrna2 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 5A_all_NT_comp98714_c0_seq3|m.38113.mrna1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| 5A_all_VO_L_146_T_102/129|m.40536.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | pass |
| 5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 6A_I20_VO_L_989_T_15/28|m.55970.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| 6A_all_VO_L_40862_T_24/27|m.54451.mrna1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000000196-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000000241-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000000303-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000000461-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000000462-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000000609-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000000685-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000000727-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000000899-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000000975-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000001011-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000002318-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000002408-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000002570-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000002642-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000002872-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000002885-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000004257-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000004396-RA | Phenylpropanoid | C3'H/CYP98A | medium | pass |
| PITA_000004869-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000004870-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000004871-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000004872-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000005076-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000005612-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000006071-RA | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| PITA_000006072-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000006102-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000006813-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000006872-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000006873-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000006874-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000007062-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| PITA_000007063-RA | Phenylpropanoid | C3'H/CYP98A | low | borderline |