PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
PITA_000000899-RA Rosmarinic Acid C4H medium pass
PITA_000000975-RA Rosmarinic Acid C4H low borderline
PITA_000001426-RA Rosmarinic Acid C4H low borderline
PITA_000002570-RA Rosmarinic Acid C4H low borderline
PITA_000002885-RA Rosmarinic Acid C4H medium pass
PITA_000004257-RA Rosmarinic Acid C4H low borderline
PITA_000004396-RA Rosmarinic Acid C4H low borderline
PITA_000004869-RA Rosmarinic Acid C4H low borderline
PITA_000004870-RA Rosmarinic Acid C4H medium pass
PITA_000004872-RA Rosmarinic Acid C4H low borderline
PITA_000005612-RA Rosmarinic Acid C4H low borderline
PITA_000006071-RA Rosmarinic Acid C4H low borderline
PITA_000006776-RA Rosmarinic Acid C4H low borderline
PITA_000006872-RA Rosmarinic Acid C4H low borderline
PITA_000006873-RA Rosmarinic Acid C4H low borderline
PITA_000006874-RA Rosmarinic Acid C4H low borderline
PITA_000007062-RA Rosmarinic Acid C4H low borderline
PITA_000007064-RA Rosmarinic Acid C4H low borderline
PITA_000007203-RA Rosmarinic Acid C4H low borderline
PITA_000007204-RA Rosmarinic Acid C4H low borderline
PITA_000007289-RA Rosmarinic Acid C4H low borderline
PITA_000007688-RA Rosmarinic Acid C4H low borderline
PITA_000007754-RA Rosmarinic Acid C4H low borderline
PITA_000007756-RA Rosmarinic Acid C4H low borderline
PITA_000007971-RA Rosmarinic Acid C4H low borderline
PITA_000007972-RA Rosmarinic Acid C4H medium pass
PITA_000007978-RA Rosmarinic Acid C4H low borderline
PITA_000007980-RA Rosmarinic Acid C4H low borderline
PITA_000008353-RA Rosmarinic Acid C4H low borderline
PITA_000008620-RA Rosmarinic Acid C4H medium pass
PITA_000008622-RA Rosmarinic Acid C4H medium pass
PITA_000008681-RA Rosmarinic Acid C4H medium pass
PITA_000008695-RA Rosmarinic Acid C4H low borderline
PITA_000009191-RA Rosmarinic Acid C4H medium pass
PITA_000009197-RA Rosmarinic Acid C4H low borderline
PITA_000010136-RA Rosmarinic Acid C4H medium pass
PITA_000010256-RA Rosmarinic Acid C4H low borderline
PITA_000010257-RA Rosmarinic Acid C4H low borderline
PITA_000010264-RA Rosmarinic Acid C4H medium pass
PITA_000010362-RA Rosmarinic Acid C4H low borderline
PITA_000010363-RA Rosmarinic Acid C4H medium pass
PITA_000010409-RA Rosmarinic Acid C4H medium pass
PITA_000010799-RA Rosmarinic Acid C4H low borderline
PITA_000010839-RA Rosmarinic Acid C4H low borderline
PITA_000010840-RA Rosmarinic Acid C4H medium pass
PITA_000011084-RA Rosmarinic Acid C4H low borderline
PITA_000011482-RA Rosmarinic Acid C4H low borderline
PITA_000012112-RA Rosmarinic Acid C4H medium pass
PITA_000012113-RA Rosmarinic Acid C4H medium pass
PITA_000012639-RA Rosmarinic Acid C4H medium pass