PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
PITA_000013490-RA Rosmarinic Acid C4H low borderline
PITA_000015505-RA Rosmarinic Acid C4H low borderline
PITA_000015506-RA Rosmarinic Acid C4H low borderline
PITA_000015650-RA Rosmarinic Acid C4H medium pass
PITA_000015915-RA Rosmarinic Acid C4H low borderline
PITA_000016127-RA Rosmarinic Acid C4H low borderline
PITA_000017562-RA Rosmarinic Acid C4H low borderline
PITA_000018199-RA Rosmarinic Acid C4H low borderline
PITA_000019010-RA Rosmarinic Acid C4H low borderline
PITA_000019034-RA Rosmarinic Acid C4H low borderline
PITA_000019040-RA Rosmarinic Acid C4H medium pass
PITA_000019042-RA Rosmarinic Acid C4H low borderline
PITA_000019446-RA Rosmarinic Acid C4H low borderline
PITA_000019693-RA Rosmarinic Acid C4H low borderline
PITA_000020244-RA Rosmarinic Acid C4H low borderline
PITA_000020245-RA Rosmarinic Acid C4H low borderline
PITA_000020637-RA Rosmarinic Acid C4H low borderline
PITA_000021078-RA Rosmarinic Acid C4H low borderline
PITA_000022034-RA Rosmarinic Acid C4H low borderline
PITA_000022145-RA Rosmarinic Acid C4H low borderline
PITA_000022231-RA Rosmarinic Acid C4H medium pass
PITA_000022232-RA Rosmarinic Acid C4H low borderline
PITA_000022455-RA Rosmarinic Acid C4H low borderline
PITA_000022456-RA Rosmarinic Acid C4H low borderline
PITA_000022846-RA Rosmarinic Acid C4H low borderline
PITA_000023051-RA Rosmarinic Acid C4H low borderline
PITA_000023229-RA Rosmarinic Acid C4H low borderline
PITA_000023275-RA Rosmarinic Acid C4H low borderline
PITA_000023499-RA Rosmarinic Acid C4H medium pass
PITA_000023806-RA Rosmarinic Acid C4H medium pass
PITA_000023808-RA Rosmarinic Acid C4H medium pass
PITA_000024089-RA Rosmarinic Acid C4H low borderline
PITA_000024090-RA Rosmarinic Acid C4H medium pass
PITA_000024091-RA Rosmarinic Acid C4H medium pass
PITA_000024813-RA Rosmarinic Acid C4H medium pass
PITA_000025223-RA Rosmarinic Acid C4H low borderline
PITA_000025224-RA Rosmarinic Acid C4H low borderline
PITA_000025276-RA Rosmarinic Acid C4H low borderline
PITA_000025412-RA Rosmarinic Acid C4H low borderline
PITA_000025413-RA Rosmarinic Acid C4H low borderline
PITA_000025415-RA Rosmarinic Acid C4H low borderline
PITA_000025417-RA Rosmarinic Acid C4H medium pass
PITA_000025722-RA Rosmarinic Acid C4H medium pass
PITA_000025817-RA Rosmarinic Acid C4H low borderline
PITA_000025906-RA Rosmarinic Acid C4H low borderline
PITA_000025907-RA Rosmarinic Acid C4H medium pass
PITA_000026028-RA Rosmarinic Acid C4H low borderline
PITA_000027035-RA Rosmarinic Acid C4H low borderline
PITA_000027540-RA Rosmarinic Acid C4H low borderline
PITA_000027632-RA Rosmarinic Acid C4H low borderline