PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
PITA_000027819-RA Rosmarinic Acid C4H medium pass
PITA_000028219-RA Rosmarinic Acid C4H medium pass
PITA_000028224-RA Rosmarinic Acid C4H low borderline
PITA_000028489-RA Rosmarinic Acid C4H low borderline
PITA_000028490-RA Rosmarinic Acid C4H low borderline
PITA_000028491-RA Rosmarinic Acid C4H low borderline
PITA_000028722-RA Rosmarinic Acid C4H medium pass
PITA_000029439-RA Rosmarinic Acid C4H low borderline
PITA_000029494-RA Rosmarinic Acid C4H low borderline
PITA_000029497-RA Rosmarinic Acid C4H low borderline
PITA_000029574-RA Rosmarinic Acid C4H medium pass
PITA_000029638-RA Rosmarinic Acid C4H low borderline
PITA_000029785-RA Rosmarinic Acid C4H medium pass
PITA_000029796-RA Rosmarinic Acid C4H low borderline
PITA_000029980-RA Rosmarinic Acid C4H low borderline
PITA_000030103-RA Rosmarinic Acid C4H low borderline
PITA_000030452-RA Rosmarinic Acid C4H low borderline
PITA_000030717-RA Rosmarinic Acid C4H low borderline
PITA_000030719-RA Rosmarinic Acid C4H medium pass
PITA_000030900-RA Rosmarinic Acid C4H low borderline
PITA_000030987-RA Rosmarinic Acid C4H low borderline
PITA_000030991-RA Rosmarinic Acid C4H low borderline
PITA_000031001-RA Rosmarinic Acid C4H low borderline
PITA_000031099-RA Rosmarinic Acid C4H low borderline
PITA_000031376-RA Rosmarinic Acid C4H low borderline
PITA_000031833-RA Rosmarinic Acid C4H medium pass
PITA_000032079-RA Rosmarinic Acid C4H low borderline
PITA_000032119-RA Rosmarinic Acid C4H medium pass
PITA_000032176-RA Rosmarinic Acid C4H medium pass
PITA_000032619-RA Rosmarinic Acid C4H medium pass
PITA_000032652-RA Rosmarinic Acid C4H medium pass
PITA_000032770-RA Rosmarinic Acid C4H low borderline
PITA_000032929-RA Rosmarinic Acid C4H low borderline
PITA_000032932-RA Rosmarinic Acid C4H low borderline
PITA_000032933-RA Rosmarinic Acid C4H low borderline
PITA_000033586-RA Rosmarinic Acid C4H low borderline
PITA_000033587-RA Rosmarinic Acid C4H low borderline
PITA_000033627-RA Rosmarinic Acid C4H low borderline
PITA_000034050-RA Rosmarinic Acid C4H low borderline
PITA_000034158-RA Rosmarinic Acid C4H medium pass
PITA_000034815-RA Rosmarinic Acid C4H low borderline
PITA_000035695-RA Rosmarinic Acid C4H low borderline
PITA_000035716-RA Rosmarinic Acid C4H low borderline
PITA_000035717-RA Rosmarinic Acid C4H low borderline
PITA_000036127-RA Rosmarinic Acid C4H low borderline
PITA_000036203-RA Rosmarinic Acid C4H low borderline
PITA_000036291-RA Rosmarinic Acid C4H medium pass
PITA_000037316-RA Rosmarinic Acid C4H low borderline
PITA_000037777-RA Rosmarinic Acid C4H low borderline
PITA_000037899-RA Rosmarinic Acid C4H low borderline