PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
PITA_000044133-RA Phenylpropanoid CAD medium pass CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
PITA_000044134-RA Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
PITA_000044263-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000044974-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000045014-RA Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
PITA_000045074-RA Phenylpropanoid CAD medium pass CAD__00017__sp_Q9SJ25_CADH2_ARATH
PITA_000045132-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000045205-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000045579-RA Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
PITA_000045618-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000045870-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000045871-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000045898-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000045901-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000046231-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000046233-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000046285-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000046524-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000046645-RA Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
PITA_000046831-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000046986-RA Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
PITA_000047388-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000048807-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000049385-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000049622-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000050354-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000051560-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000052332-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000052334-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000053187-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000053256-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000053280-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000053802-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000053860-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000054694-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000054918-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000054963-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000055403-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000056542-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000056855-RA Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
PITA_000057755-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000057896-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000058448-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000059316-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000059870-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000059893-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000060070-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000060338-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000060339-RA Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
PITA_000060878-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM