PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
PITA_000077719-RA Phenylpropanoid CAD medium pass
PITA_000078788-RA Phenylpropanoid CAD low borderline
PITA_000078947-RA Phenylpropanoid CAD low borderline
PITA_000079152-RA Phenylpropanoid CAD medium pass
PITA_000079854-RA Phenylpropanoid CAD medium pass
PITA_000080108-RA Phenylpropanoid CAD low borderline
PITA_000080199-RA Phenylpropanoid CAD medium pass
PITA_000080200-RA Phenylpropanoid CAD medium pass
PITA_000080358-RA Phenylpropanoid CAD low borderline
PITA_000080390-RA Phenylpropanoid CAD low borderline
PITA_000080393-RA Phenylpropanoid CAD low borderline
PITA_000080607-RA Phenylpropanoid CAD medium pass
PITA_000080668-RA Phenylpropanoid CAD medium pass
PITA_000080767-RA Phenylpropanoid CAD medium pass
PITA_000081016-RA Phenylpropanoid CAD medium pass
PITA_000081120-RA Phenylpropanoid CAD medium pass
PITA_000081232-RA Phenylpropanoid CAD medium pass
PITA_000081290-RA Phenylpropanoid CAD low borderline
PITA_000082681-RA Phenylpropanoid CAD low borderline
PITA_000082835-RA Phenylpropanoid CAD medium pass
PITA_000083259-RA Phenylpropanoid CAD medium pass
PITA_000083432-RA Phenylpropanoid CAD low borderline
PITA_000083789-RA Phenylpropanoid CAD medium pass
PITA_000084016-RA Phenylpropanoid CAD low borderline
PITA_000084227-RA Phenylpropanoid CAD low borderline
PITA_000084285-RA Phenylpropanoid CAD medium pass
PITA_000084532-RA Phenylpropanoid CAD medium pass
PITA_000085757-RA Phenylpropanoid CAD medium pass
PITA_000085967-RA Phenylpropanoid CAD low borderline
PITA_000086597-RA Phenylpropanoid CAD medium pass
PITA_000087002-RA Phenylpropanoid CAD medium pass
PITA_000087003-RA Phenylpropanoid CAD low borderline
PITA_000087350-RA Phenylpropanoid CAD medium pass
PITA_000087458-RA Phenylpropanoid CAD low borderline
PITA_000087508-RA Phenylpropanoid CAD medium pass
PITA_000088080-RA Phenylpropanoid CAD low borderline
PITA_000088160-RA Phenylpropanoid CAD low borderline
PITA_000088426-RA Phenylpropanoid CAD medium borderline
PITA_000089027-RA Phenylpropanoid CAD medium pass
PITA_000089064-RA Phenylpropanoid CAD medium pass
PITA_000089087-RA Phenylpropanoid CAD medium pass
PITA_000089092-RA Phenylpropanoid CAD medium pass
PITA_000089555-RA Phenylpropanoid CAD low borderline
PITA_000089692-RA Phenylpropanoid CAD low borderline
PITA_000089903-RA Phenylpropanoid CAD low borderline
PITA_000090552-RA Phenylpropanoid CAD medium pass
PITA_000090556-RA Phenylpropanoid CAD low borderline
PITA_000091590-RA Phenylpropanoid CAD medium borderline
PITA_000091771-RA Phenylpropanoid CAD medium borderline
PITA_000091998-RA Phenylpropanoid CAD medium pass