PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
1A_I5_VO_L_6720_T_12/20|m.10219.mrna2 Alkaloid CODM/T6ODM low borderline
3A_all_NT_comp89573_c0_seq1|m.27450.mrna1 Alkaloid CODM/T6ODM medium borderline
PITA_000000566-RA Alkaloid CODM/T6ODM medium borderline
PITA_000001633-RA Alkaloid CODM/T6ODM medium borderline
PITA_000001728-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002111-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002117-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002509-RA Alkaloid CODM/T6ODM medium borderline
PITA_000002510-RA Alkaloid CODM/T6ODM medium borderline
PITA_000004271-RA Alkaloid CODM/T6ODM medium borderline
PITA_000004327-RA Alkaloid CODM/T6ODM medium borderline
PITA_000005097-RA Alkaloid CODM/T6ODM medium borderline
PITA_000005240-RA Alkaloid CODM/T6ODM medium borderline
PITA_000006250-RA Alkaloid CODM/T6ODM medium borderline
PITA_000008082-RA Alkaloid CODM/T6ODM medium borderline
PITA_000009992-RA Alkaloid CODM/T6ODM medium borderline
PITA_000009997-RA Alkaloid CODM/T6ODM medium borderline
PITA_000010668-RA Alkaloid CODM/T6ODM medium borderline
PITA_000011975-RA Alkaloid CODM/T6ODM medium borderline
PITA_000012007-RA Alkaloid CODM/T6ODM medium borderline
PITA_000012624-RA Alkaloid CODM/T6ODM medium borderline
PITA_000014194-RA Alkaloid CODM/T6ODM medium borderline
PITA_000014783-RA Alkaloid CODM/T6ODM medium borderline
PITA_000014784-RA Alkaloid CODM/T6ODM medium borderline
PITA_000015930-RA Alkaloid CODM/T6ODM medium borderline
PITA_000015934-RA Alkaloid CODM/T6ODM medium borderline
PITA_000015938-RA Alkaloid CODM/T6ODM medium borderline
PITA_000016145-RA Alkaloid CODM/T6ODM medium borderline
PITA_000016689-RA Alkaloid CODM/T6ODM medium borderline
PITA_000016690-RA Alkaloid CODM/T6ODM medium borderline
PITA_000016929-RA Alkaloid CODM/T6ODM medium borderline
PITA_000020024-RA Alkaloid CODM/T6ODM medium borderline
PITA_000020112-RA Alkaloid CODM/T6ODM low borderline
PITA_000020113-RA Alkaloid CODM/T6ODM medium borderline
PITA_000020114-RA Alkaloid CODM/T6ODM medium borderline
PITA_000022227-RA Alkaloid CODM/T6ODM low borderline
PITA_000023239-RA Alkaloid CODM/T6ODM medium borderline
PITA_000023428-RA Alkaloid CODM/T6ODM medium borderline
PITA_000024381-RA Alkaloid CODM/T6ODM medium borderline
PITA_000024505-RA Alkaloid CODM/T6ODM medium borderline
PITA_000024768-RA Alkaloid CODM/T6ODM medium borderline
PITA_000024799-RA Alkaloid CODM/T6ODM medium borderline
PITA_000025735-RA Alkaloid CODM/T6ODM medium borderline
PITA_000026693-RA Alkaloid CODM/T6ODM medium borderline
PITA_000027993-RA Alkaloid CODM/T6ODM medium pass
PITA_000028525-RA Alkaloid CODM/T6ODM medium borderline
PITA_000028933-RA Alkaloid CODM/T6ODM low borderline
PITA_000028936-RA Alkaloid CODM/T6ODM low borderline
PITA_000029236-RA Alkaloid CODM/T6ODM medium borderline
PITA_000029657-RA Alkaloid CODM/T6ODM medium borderline