PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
Reset
Gene Pathway Family Confidence Status Best Target
PITA_000000438-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000000883-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000003880-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000006732-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000006733-RA Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000008197-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000011168-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000016010-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000017769-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000023014-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000023015-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000023550-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000026174-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000031478-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000033730-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000034512-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000034514-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000036207-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000043580-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000044279-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000045195-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000045429-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000047636-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000047637-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000049714-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000051347-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000051503-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000051858-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000051926-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000053692-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000058054-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000061936-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000062498-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000063602-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000070341-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000071894-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000072537-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000073741-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000074241-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000074255-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000076327-RA Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH
PITA_000080736-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000081831-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000081832-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000083943-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000085483-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000085609-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000089542-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000093014-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
PITA_000095538-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL