PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Terpenoid CYP76 medium pass CYP76__00016__sp_P0DXJ6_C7631_LOPWI
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Terpenoid CYP76 medium borderline CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna2 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna3 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
6A_I20_VO_L_989_T_15/28|m.55970.mrna1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
6A_all_VO_L_40862_T_24/27|m.54451.mrna1 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000000241-RA Terpenoid CYP76 medium pass CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
PITA_000000461-RA Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000000462-RA Terpenoid CYP76 low borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
PITA_000000609-RA Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
PITA_000000685-RA Terpenoid CYP76 medium borderline CYP76__00024__sp_W0FKI0_DOX1_PERHD
PITA_000000727-RA Terpenoid CYP76 medium pass CYP76__00014__sp_I3PFJ5_C76AD_BETVU
PITA_000000899-RA Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000000975-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000002408-RA Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000002570-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000002872-RA Terpenoid CYP76 medium pass CYP76__00001__sp_A0A0C5Q4Y6_C76H2_ROSOF
PITA_000002885-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000004009-RA Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
PITA_000004257-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000004396-RA Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
PITA_000004869-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000004870-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000004871-RA Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000004872-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000005612-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000006071-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000006072-RA Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000006776-RA Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000007062-RA Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
PITA_000007063-RA Terpenoid CYP76 medium pass CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
PITA_000007289-RA Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000007754-RA Terpenoid CYP76 low borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000007971-RA Terpenoid CYP76 low borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000007972-RA Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000007978-RA Terpenoid CYP76 low borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000007980-RA Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000008353-RA Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
PITA_000008620-RA Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU