PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
PITA_000050800-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000051065-RA Terpenoid CYP76 medium pass CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ
PITA_000051216-RA Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000051298-RA Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000051299-RA Terpenoid CYP76 low borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000051406-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000051433-RA Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000051437-RA Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
PITA_000051675-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000051869-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000052144-RA Terpenoid CYP76 low borderline CYP76__00017__sp_Q14T82_C76B9_PETHY
PITA_000052204-RA Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
PITA_000052275-RA Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
PITA_000052929-RA Terpenoid CYP76 medium borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
PITA_000052955-RA Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000053114-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000053186-RA Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000053270-RA Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000053316-RA Terpenoid CYP76 medium pass CYP76__00023__sp_S4UX02_CYPH1_SALMI
PITA_000053544-RA Terpenoid CYP76 medium borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
PITA_000053952-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000054034-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000054036-RA Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
PITA_000054037-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000054285-RA Terpenoid CYP76 medium pass CYP76__00017__sp_Q14T82_C76B9_PETHY
PITA_000054286-RA Terpenoid CYP76 low borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000054409-RA Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
PITA_000054618-RA Terpenoid CYP76 medium pass CYP76__00016__sp_P0DXJ6_C7631_LOPWI
PITA_000054771-RA Terpenoid CYP76 low borderline CYP76__00007__sp_A0A1D8QMD2_C76K7_ROSOF
PITA_000055517-RA Terpenoid CYP76 medium pass CYP76__00023__sp_S4UX02_CYPH1_SALMI
PITA_000055813-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000057115-RA Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000057135-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000057153-RA Terpenoid CYP76 medium pass CYP76__00015__sp_P0DKI2_C76AN_BETVU
PITA_000057179-RA Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000057180-RA Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000057181-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000057182-RA Terpenoid CYP76 medium pass CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
PITA_000057402-RA Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000057405-RA Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
PITA_000057462-RA Terpenoid CYP76 medium borderline CYP76__00017__sp_Q14T82_C76B9_PETHY
PITA_000057574-RA Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
PITA_000057647-RA Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000057798-RA Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000057948-RA Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
PITA_000058385-RA Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
PITA_000058409-RA Terpenoid CYP76 low borderline CYP76__00001__sp_A0A0C5Q4Y6_C76H2_ROSOF
PITA_000058857-RA Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
PITA_000058988-RA Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
PITA_000058989-RA Terpenoid CYP76 low borderline CYP76__00018__sp_Q69X58_C76M7_ORYSJ