PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
1A_I3_VO_L_4658_T_21/46|m.8142.mrna1 Flavonoid F3H medium borderline
1A_I5_VO_L_252_T_126/507|m.9280.mrna2 Flavonoid F3H medium borderline
1A_I5_VO_L_6720_T_12/20|m.10219.mrna1 Flavonoid F3H medium borderline
2A_I4_VO_L_1_T_88908/124638|m.26552.mrna1 Flavonoid F3H medium borderline
3A_all_NT_comp89573_c0_seq1|m.27450.mrna1 Flavonoid F3H medium borderline
5A_I13_VO_L_1332_T_13/14|m.44452.mrna2 Flavonoid F3H medium borderline
5A_all_VO_L_2_T_137289/409051|m.39027.mrna4 Flavonoid F3H medium borderline
6A_I23_NT_comp43693_c0_seq21|m.58647.mrna1 Flavonoid F3H medium borderline
PITA_000000240-RA Flavonoid F3H medium borderline
PITA_000001395-RA Flavonoid F3H medium borderline
PITA_000001582-RA Flavonoid F3H medium borderline
PITA_000001633-RA Flavonoid F3H medium borderline
PITA_000001634-RA Flavonoid F3H medium borderline
PITA_000001728-RA Flavonoid F3H medium borderline
PITA_000002111-RA Flavonoid F3H medium borderline
PITA_000002117-RA Flavonoid F3H medium borderline
PITA_000002515-RA Flavonoid F3H low borderline
PITA_000002529-RA Flavonoid F3H low borderline
PITA_000003535-RA Flavonoid F3H medium borderline
PITA_000004271-RA Flavonoid F3H medium pass
PITA_000004289-RA Flavonoid F3H low borderline
PITA_000004327-RA Flavonoid F3H medium borderline
PITA_000004387-RA Flavonoid F3H medium borderline
PITA_000005240-RA Flavonoid F3H medium borderline
PITA_000005980-RA Flavonoid F3H low borderline
PITA_000006190-RA Flavonoid F3H low borderline
PITA_000006198-RA Flavonoid F3H medium borderline
PITA_000006249-RA Flavonoid F3H low borderline
PITA_000006250-RA Flavonoid F3H medium borderline
PITA_000006251-RA Flavonoid F3H low borderline
PITA_000008082-RA Flavonoid F3H medium borderline
PITA_000008083-RA Flavonoid F3H medium borderline
PITA_000009992-RA Flavonoid F3H medium borderline
PITA_000009997-RA Flavonoid F3H medium borderline
PITA_000010503-RA Flavonoid F3H medium borderline
PITA_000010668-RA Flavonoid F3H medium borderline
PITA_000011975-RA Flavonoid F3H medium borderline
PITA_000011998-RA Flavonoid F3H low borderline
PITA_000012007-RA Flavonoid F3H medium borderline
PITA_000012008-RA Flavonoid F3H medium borderline
PITA_000012624-RA Flavonoid F3H medium borderline
PITA_000012625-RA Flavonoid F3H medium borderline
PITA_000014194-RA Flavonoid F3H medium borderline
PITA_000014195-RA Flavonoid F3H medium pass
PITA_000014389-RA Flavonoid F3H low borderline
PITA_000014783-RA Flavonoid F3H medium borderline
PITA_000014784-RA Flavonoid F3H medium borderline
PITA_000015930-RA Flavonoid F3H medium borderline
PITA_000015934-RA Flavonoid F3H medium borderline
PITA_000015938-RA Flavonoid F3H medium borderline