PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status Best Target
PITA_000032863-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000033074-RA Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000033784-RA Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
PITA_000033860-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000034019-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000034144-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000034420-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000034527-RA Flavonoid F3H low borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000034865-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000035381-RA Flavonoid F3H low borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
PITA_000036669-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000036758-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000038003-RA Flavonoid F3H low borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000038698-RA Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
PITA_000038700-RA Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
PITA_000039021-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000039022-RA Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000039907-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000039997-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000040005-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000040227-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000040610-RA Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
PITA_000042782-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000042784-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000042925-RA Flavonoid F3H low borderline F3H__00001__sp_A0A4D6Q4T7_FL3H2_CROXC
PITA_000043155-RA Flavonoid F3H low borderline F3H__00002__sp_A0A4D6Q9B0_FL3H1_CROXC
PITA_000043339-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000044247-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000044854-RA Flavonoid F3H medium borderline F3H__00002__sp_A0A4D6Q9B0_FL3H1_CROXC
PITA_000045501-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000045734-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000046174-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000046301-RA Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000046488-RA Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000047173-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000047344-RA Flavonoid F3H medium borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
PITA_000048284-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000049225-RA Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
PITA_000049241-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000049296-RA Flavonoid F3H medium pass F3H__00001__sp_A0A4D6Q4T7_FL3H2_CROXC
PITA_000049326-RA Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
PITA_000049618-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000049689-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000049750-RA Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
PITA_000050208-RA Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
PITA_000050314-RA Flavonoid F3H medium borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
PITA_000050478-RA Flavonoid F3H medium borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
PITA_000051193-RA Flavonoid F3H medium borderline F3H__00001__sp_A0A4D6Q4T7_FL3H2_CROXC
PITA_000051197-RA Flavonoid F3H medium borderline F3H__00002__sp_A0A4D6Q9B0_FL3H1_CROXC
PITA_000051369-RA Flavonoid F3H medium borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ