PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Alkaloid G8O/G8H medium borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna1 Alkaloid G8O/G8H medium borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna2 Alkaloid G8O/G8H medium borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna3 Alkaloid G8O/G8H medium borderline
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Alkaloid G8O/G8H medium borderline
6A_all_VO_L_40862_T_24/27|m.54451.mrna1 Alkaloid G8O/G8H medium borderline
PITA_000000685-RA Alkaloid G8O/G8H medium borderline
PITA_000001426-RA Alkaloid G8O/G8H medium borderline
PITA_000002408-RA Alkaloid G8O/G8H medium borderline
PITA_000002885-RA Alkaloid G8O/G8H medium borderline
PITA_000004009-RA Alkaloid G8O/G8H low borderline
PITA_000004870-RA Alkaloid G8O/G8H medium borderline
PITA_000006071-RA Alkaloid G8O/G8H medium borderline
PITA_000006072-RA Alkaloid G8O/G8H medium borderline
PITA_000007064-RA Alkaloid G8O/G8H low borderline
PITA_000007972-RA Alkaloid G8O/G8H medium pass
PITA_000007980-RA Alkaloid G8O/G8H medium borderline
PITA_000009191-RA Alkaloid G8O/G8H medium borderline
PITA_000010362-RA Alkaloid G8O/G8H medium borderline
PITA_000012639-RA Alkaloid G8O/G8H medium borderline
PITA_000013490-RA Alkaloid G8O/G8H medium borderline
PITA_000014939-RA Alkaloid G8O/G8H low borderline
PITA_000015505-RA Alkaloid G8O/G8H low borderline
PITA_000015506-RA Alkaloid G8O/G8H medium pass
PITA_000016126-RA Alkaloid G8O/G8H medium borderline
PITA_000016134-RA Alkaloid G8O/G8H medium borderline
PITA_000018199-RA Alkaloid G8O/G8H low borderline
PITA_000019040-RA Alkaloid G8O/G8H medium borderline
PITA_000020244-RA Alkaloid G8O/G8H medium borderline
PITA_000022034-RA Alkaloid G8O/G8H low borderline
PITA_000023275-RA Alkaloid G8O/G8H medium borderline
PITA_000023557-RA Alkaloid G8O/G8H medium borderline
PITA_000023807-RA Alkaloid G8O/G8H low borderline
PITA_000024905-RA Alkaloid G8O/G8H medium pass
PITA_000025415-RA Alkaloid G8O/G8H medium pass
PITA_000025417-RA Alkaloid G8O/G8H low borderline
PITA_000025821-RA Alkaloid G8O/G8H medium borderline
PITA_000025907-RA Alkaloid G8O/G8H medium borderline
PITA_000027269-RA Alkaloid G8O/G8H low borderline
PITA_000028490-RA Alkaloid G8O/G8H medium borderline
PITA_000028491-RA Alkaloid G8O/G8H medium borderline
PITA_000029494-RA Alkaloid G8O/G8H medium borderline
PITA_000029496-RA Alkaloid G8O/G8H low borderline
PITA_000029497-RA Alkaloid G8O/G8H medium pass
PITA_000029574-RA Alkaloid G8O/G8H medium borderline
PITA_000029776-RA Alkaloid G8O/G8H low borderline
PITA_000030452-RA Alkaloid G8O/G8H low borderline
PITA_000030453-RA Alkaloid G8O/G8H medium borderline
PITA_000030718-RA Alkaloid G8O/G8H low borderline
PITA_000030900-RA Alkaloid G8O/G8H medium pass