PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
Reset
Gene Pathway Family Confidence Status Best Target
PITA_000026247-RA Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
PITA_000026248-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000026353-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000027509-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000027510-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000027511-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000027512-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000027826-RA Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
PITA_000028108-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000029079-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000029947-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000030334-RA Alkaloid GES low borderline GES__00008__sp_Q84ZW8_ACSS_MAIZE
PITA_000030335-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000030337-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000030380-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000030381-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000032174-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000032175-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000032443-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000032660-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000033455-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000033787-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000034702-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000034703-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000035063-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000036626-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000037122-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000037126-RA Alkaloid GES medium pass GES__00003__sp_C0KWV6_GRNL7_PERFR
PITA_000037544-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000037892-RA Alkaloid GES low borderline GES__00006__sp_Q4JHG3_GRNLC_PERFH
PITA_000038511-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000040030-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000040152-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000041743-RA Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH
PITA_000044974-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000045132-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000045133-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000045205-RA Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH
PITA_000045618-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000045870-RA Alkaloid GES medium borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000045871-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000046231-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000046233-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000046285-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000046556-RA Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH
PITA_000046557-RA Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000049385-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000049386-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000049622-RA Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH
PITA_000050354-RA Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH