PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
PITA_000051560-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000051608-RA Alkaloid GES low borderline GES__00003__sp_C0KWV6_GRNL7_PERFR
PITA_000051609-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000052037-RA Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000052332-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000052333-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000052334-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000052354-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053187-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053256-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053280-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053701-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000053802-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053803-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053860-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000053861-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000054694-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000054962-RA Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000054963-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000055269-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000057755-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000057896-RA Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
PITA_000059237-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000059417-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000059666-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000059667-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000059870-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000059893-RA Alkaloid GES low borderline GES__00006__sp_Q4JHG3_GRNLC_PERFH
PITA_000060070-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000060338-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000060680-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000060681-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000060878-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000061394-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000061595-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000061686-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000061687-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000061832-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000062423-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000062483-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000062484-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000063085-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000063608-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000064157-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000064222-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
PITA_000064284-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000064372-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000064373-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000064385-RA Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
PITA_000065035-RA Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN