PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
PITA_000001844-RA Alkaloid GS medium pass
PITA_000004255-RA Alkaloid GS low borderline
PITA_000005297-RA Alkaloid GS low borderline
PITA_000005298-RA Alkaloid GS low borderline
PITA_000005299-RA Alkaloid GS low borderline
PITA_000007402-RA Alkaloid GS low borderline
PITA_000008068-RA Alkaloid GS low borderline
PITA_000011135-RA Alkaloid GS low borderline
PITA_000011584-RA Alkaloid GS low borderline
PITA_000012258-RA Alkaloid GS low borderline
PITA_000017745-RA Alkaloid GS low borderline
PITA_000018256-RA Alkaloid GS low borderline
PITA_000018257-RA Alkaloid GS medium pass
PITA_000018354-RA Alkaloid GS low borderline
PITA_000019658-RA Alkaloid GS low borderline
PITA_000023330-RA Alkaloid GS low borderline
PITA_000024163-RA Alkaloid GS low borderline
PITA_000027677-RA Alkaloid GS low borderline
PITA_000029018-RA Alkaloid GS low borderline
PITA_000030654-RA Alkaloid GS medium pass
PITA_000031236-RA Alkaloid GS high pass
PITA_000032691-RA Alkaloid GS low borderline
PITA_000034924-RA Alkaloid GS low borderline
PITA_000034925-RA Alkaloid GS high pass
PITA_000035153-RA Alkaloid GS low borderline
PITA_000035532-RA Alkaloid GS low borderline
PITA_000036053-RA Alkaloid GS low borderline
PITA_000036909-RA Alkaloid GS low borderline
PITA_000037227-RA Alkaloid GS low borderline
PITA_000039607-RA Alkaloid GS low borderline
PITA_000040712-RA Alkaloid GS low borderline
PITA_000040713-RA Alkaloid GS low borderline
PITA_000040815-RA Alkaloid GS medium pass
PITA_000042716-RA Alkaloid GS low borderline
PITA_000042718-RA Alkaloid GS low borderline
PITA_000042847-RA Alkaloid GS low borderline
PITA_000042934-RA Alkaloid GS low borderline
PITA_000044133-RA Alkaloid GS low borderline
PITA_000045014-RA Alkaloid GS high pass
PITA_000045074-RA Alkaloid GS medium pass
PITA_000045579-RA Alkaloid GS low borderline
PITA_000045677-RA Alkaloid GS low borderline
PITA_000046645-RA Alkaloid GS high pass
PITA_000046986-RA Alkaloid GS low borderline
PITA_000047141-RA Alkaloid GS medium pass
PITA_000047143-RA Alkaloid GS medium pass
PITA_000050315-RA Alkaloid GS low borderline
PITA_000050316-RA Alkaloid GS low borderline
PITA_000050501-RA Alkaloid GS low borderline
PITA_000054708-RA Alkaloid GS low borderline