PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
1A_I3_VO_L_4658_T_21/46|m.8142.mrna1 Alkaloid H6H medium borderline
1A_I5_VO_L_6720_T_12/20|m.10219.mrna1 Alkaloid H6H medium borderline
2A_I4_VO_L_1_T_88908/124638|m.26552.mrna1 Alkaloid H6H medium borderline
5A_I13_VO_L_1332_T_13/14|m.44452.mrna2 Alkaloid H6H medium borderline
5A_all_VO_L_2_T_137289/409051|m.39027.mrna4 Alkaloid H6H low borderline
6A_I23_NT_comp43693_c0_seq21|m.58647.mrna1 Alkaloid H6H medium borderline
PITA_000000240-RA Alkaloid H6H medium pass
PITA_000001395-RA Alkaloid H6H medium borderline
PITA_000001582-RA Alkaloid H6H medium borderline
PITA_000002515-RA Alkaloid H6H low borderline
PITA_000002528-RA Alkaloid H6H low borderline
PITA_000002529-RA Alkaloid H6H low borderline
PITA_000003535-RA Alkaloid H6H high pass
PITA_000004087-RA Alkaloid H6H low borderline
PITA_000004288-RA Alkaloid H6H low borderline
PITA_000004387-RA Alkaloid H6H medium borderline
PITA_000005876-RA Alkaloid H6H low borderline
PITA_000005980-RA Alkaloid H6H low borderline
PITA_000005982-RA Alkaloid H6H low borderline
PITA_000008083-RA Alkaloid H6H medium borderline
PITA_000010503-RA Alkaloid H6H medium borderline
PITA_000011998-RA Alkaloid H6H low borderline
PITA_000012008-RA Alkaloid H6H low borderline
PITA_000012625-RA Alkaloid H6H medium borderline
PITA_000014195-RA Alkaloid H6H medium pass
PITA_000014389-RA Alkaloid H6H low borderline
PITA_000015494-RA Alkaloid H6H medium borderline
PITA_000015932-RA Alkaloid H6H low borderline
PITA_000015935-RA Alkaloid H6H low borderline
PITA_000015937-RA Alkaloid H6H low borderline
PITA_000016144-RA Alkaloid H6H low borderline
PITA_000016528-RA Alkaloid H6H medium borderline
PITA_000016687-RA Alkaloid H6H medium borderline
PITA_000016930-RA Alkaloid H6H medium borderline
PITA_000017254-RA Alkaloid H6H medium borderline
PITA_000017871-RA Alkaloid H6H low borderline
PITA_000017891-RA Alkaloid H6H medium borderline
PITA_000019901-RA Alkaloid H6H low borderline
PITA_000020115-RA Alkaloid H6H low borderline
PITA_000020402-RA Alkaloid H6H low borderline
PITA_000020403-RA Alkaloid H6H low borderline
PITA_000020605-RA Alkaloid H6H low borderline
PITA_000021167-RA Alkaloid H6H medium borderline
PITA_000021821-RA Alkaloid H6H medium borderline
PITA_000021824-RA Alkaloid H6H low borderline
PITA_000022352-RA Alkaloid H6H medium borderline
PITA_000022499-RA Alkaloid H6H low borderline
PITA_000023281-RA Alkaloid H6H medium borderline
PITA_000024382-RA Alkaloid H6H low borderline
PITA_000024383-RA Alkaloid H6H low borderline