PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
PITA_000024679-RA Alkaloid H6H low borderline
PITA_000024800-RA Alkaloid H6H medium borderline
PITA_000025161-RA Alkaloid H6H low borderline
PITA_000025162-RA Alkaloid H6H low borderline
PITA_000025163-RA Alkaloid H6H medium borderline
PITA_000025166-RA Alkaloid H6H medium borderline
PITA_000025205-RA Alkaloid H6H medium borderline
PITA_000026550-RA Alkaloid H6H low borderline
PITA_000026772-RA Alkaloid H6H low borderline
PITA_000027799-RA Alkaloid H6H low borderline
PITA_000027990-RA Alkaloid H6H medium borderline
PITA_000027992-RA Alkaloid H6H low borderline
PITA_000028599-RA Alkaloid H6H medium borderline
PITA_000028934-RA Alkaloid H6H low borderline
PITA_000028935-RA Alkaloid H6H low borderline
PITA_000028937-RA Alkaloid H6H low borderline
PITA_000029414-RA Alkaloid H6H medium borderline
PITA_000030160-RA Alkaloid H6H medium borderline
PITA_000030161-RA Alkaloid H6H medium borderline
PITA_000030907-RA Alkaloid H6H medium borderline
PITA_000031206-RA Alkaloid H6H low borderline
PITA_000031437-RA Alkaloid H6H low borderline
PITA_000031610-RA Alkaloid H6H low borderline
PITA_000032215-RA Alkaloid H6H medium borderline
PITA_000032863-RA Alkaloid H6H medium pass
PITA_000032957-RA Alkaloid H6H medium borderline
PITA_000033074-RA Alkaloid H6H low borderline
PITA_000033404-RA Alkaloid H6H low borderline
PITA_000033860-RA Alkaloid H6H medium borderline
PITA_000034019-RA Alkaloid H6H medium borderline
PITA_000034144-RA Alkaloid H6H medium borderline
PITA_000034417-RA Alkaloid H6H low borderline
PITA_000036669-RA Alkaloid H6H medium borderline
PITA_000039021-RA Alkaloid H6H medium borderline
PITA_000039022-RA Alkaloid H6H low borderline
PITA_000039997-RA Alkaloid H6H medium borderline
PITA_000040610-RA Alkaloid H6H medium borderline
PITA_000040870-RA Alkaloid H6H low borderline
PITA_000042490-RA Alkaloid H6H low borderline
PITA_000042925-RA Alkaloid H6H low borderline
PITA_000043155-RA Alkaloid H6H low borderline
PITA_000044854-RA Alkaloid H6H low borderline
PITA_000045501-RA Alkaloid H6H medium pass
PITA_000045734-RA Alkaloid H6H medium borderline
PITA_000046488-RA Alkaloid H6H low borderline
PITA_000047173-RA Alkaloid H6H medium borderline
PITA_000048284-RA Alkaloid H6H medium borderline
PITA_000049225-RA Alkaloid H6H low borderline
PITA_000049296-RA Alkaloid H6H low borderline
PITA_000049689-RA Alkaloid H6H medium borderline