PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
PITA_000049847-RA Alkaloid H6H low borderline
PITA_000050208-RA Alkaloid H6H low borderline
PITA_000050969-RA Alkaloid H6H low borderline
PITA_000051369-RA Alkaloid H6H medium borderline
PITA_000051938-RA Alkaloid H6H low borderline
PITA_000052226-RA Alkaloid H6H low borderline
PITA_000052261-RA Alkaloid H6H low borderline
PITA_000052355-RA Alkaloid H6H low borderline
PITA_000052621-RA Alkaloid H6H low borderline
PITA_000052796-RA Alkaloid H6H low borderline
PITA_000053247-RA Alkaloid H6H medium pass
PITA_000053328-RA Alkaloid H6H medium borderline
PITA_000053351-RA Alkaloid H6H medium borderline
PITA_000053427-RA Alkaloid H6H low borderline
PITA_000053643-RA Alkaloid H6H low borderline
PITA_000054543-RA Alkaloid H6H low borderline
PITA_000057745-RA Alkaloid H6H medium borderline
PITA_000057887-RA Alkaloid H6H low borderline
PITA_000058095-RA Alkaloid H6H medium borderline
PITA_000058937-RA Alkaloid H6H medium borderline
PITA_000058978-RA Alkaloid H6H low borderline
PITA_000059221-RA Alkaloid H6H low borderline
PITA_000059481-RA Alkaloid H6H medium borderline
PITA_000059640-RA Alkaloid H6H medium borderline
PITA_000062079-RA Alkaloid H6H low borderline
PITA_000062107-RA Alkaloid H6H medium borderline
PITA_000062501-RA Alkaloid H6H medium borderline
PITA_000062989-RA Alkaloid H6H medium borderline
PITA_000063189-RA Alkaloid H6H medium borderline
PITA_000063248-RA Alkaloid H6H low borderline
PITA_000063605-RA Alkaloid H6H high pass
PITA_000063853-RA Alkaloid H6H low borderline
PITA_000064686-RA Alkaloid H6H low borderline
PITA_000068730-RA Alkaloid H6H medium borderline
PITA_000068748-RA Alkaloid H6H medium borderline
PITA_000072371-RA Alkaloid H6H medium borderline
PITA_000072558-RA Alkaloid H6H low borderline
PITA_000072931-RA Alkaloid H6H medium borderline
PITA_000073206-RA Alkaloid H6H medium borderline
PITA_000073248-RA Alkaloid H6H low borderline
PITA_000073475-RA Alkaloid H6H low borderline
PITA_000073857-RA Alkaloid H6H low borderline
PITA_000074681-RA Alkaloid H6H medium pass
PITA_000075068-RA Alkaloid H6H medium borderline
PITA_000075124-RA Alkaloid H6H low borderline
PITA_000075975-RA Alkaloid H6H low borderline
PITA_000077055-RA Alkaloid H6H medium borderline
PITA_000077295-RA Alkaloid H6H low borderline
PITA_000077708-RA Alkaloid H6H low borderline
PITA_000077826-RA Alkaloid H6H low borderline