PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
Reset
Gene Pathway Family Confidence Status
2A_all_NT_comp86965_c0_seq1|m.13007.mrna1 Phenylpropanoid HCT medium pass
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Phenylpropanoid HCT medium pass
PITA_000000833-RA Phenylpropanoid HCT medium pass
PITA_000000950-RA Phenylpropanoid HCT low borderline
PITA_000002175-RA Phenylpropanoid HCT medium pass
PITA_000002181-RA Phenylpropanoid HCT low borderline
PITA_000002834-RA Phenylpropanoid HCT low borderline
PITA_000002844-RA Phenylpropanoid HCT low borderline
PITA_000006323-RA Phenylpropanoid HCT medium pass
PITA_000009533-RA Phenylpropanoid HCT medium pass
PITA_000011445-RA Phenylpropanoid HCT medium pass
PITA_000011537-RA Phenylpropanoid HCT low borderline
PITA_000011713-RA Phenylpropanoid HCT low borderline
PITA_000011715-RA Phenylpropanoid HCT low borderline
PITA_000012117-RA Phenylpropanoid HCT low borderline
PITA_000012243-RA Phenylpropanoid HCT medium pass
PITA_000014170-RA Phenylpropanoid HCT medium pass
PITA_000014608-RA Phenylpropanoid HCT low borderline
PITA_000016979-RA Phenylpropanoid HCT low borderline
PITA_000017482-RA Phenylpropanoid HCT low borderline
PITA_000021157-RA Phenylpropanoid HCT low borderline
PITA_000023153-RA Phenylpropanoid HCT medium pass
PITA_000023611-RA Phenylpropanoid HCT medium pass
PITA_000025182-RA Phenylpropanoid HCT low borderline
PITA_000025302-RA Phenylpropanoid HCT medium pass
PITA_000025947-RA Phenylpropanoid HCT medium pass
PITA_000025948-RA Phenylpropanoid HCT medium pass
PITA_000026379-RA Phenylpropanoid HCT medium pass
PITA_000026380-RA Phenylpropanoid HCT medium pass
PITA_000026467-RA Phenylpropanoid HCT medium pass
PITA_000026994-RA Phenylpropanoid HCT medium pass
PITA_000028396-RA Phenylpropanoid HCT low borderline
PITA_000028398-RA Phenylpropanoid HCT medium pass
PITA_000028782-RA Phenylpropanoid HCT medium pass
PITA_000029191-RA Phenylpropanoid HCT medium pass
PITA_000029370-RA Phenylpropanoid HCT medium pass
PITA_000029371-RA Phenylpropanoid HCT low borderline
PITA_000029572-RA Phenylpropanoid HCT low borderline
PITA_000030323-RA Phenylpropanoid HCT low borderline
PITA_000031066-RA Phenylpropanoid HCT medium pass
PITA_000031611-RA Phenylpropanoid HCT medium pass
PITA_000031627-RA Phenylpropanoid HCT low borderline
PITA_000032042-RA Phenylpropanoid HCT low borderline
PITA_000034070-RA Phenylpropanoid HCT low borderline
PITA_000034775-RA Phenylpropanoid HCT low borderline
PITA_000035028-RA Phenylpropanoid HCT medium pass
PITA_000035029-RA Phenylpropanoid HCT medium pass
PITA_000036259-RA Phenylpropanoid HCT low borderline
PITA_000036450-RA Phenylpropanoid HCT medium pass
PITA_000037786-RA Phenylpropanoid HCT low borderline