PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status Best Target
PITA_000037965-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000038868-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000039466-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000040182-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000041718-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000042797-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000044091-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000045041-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000045042-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000045833-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000046003-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000047171-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000047399-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000047883-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000048844-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000050772-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000051190-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000051832-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000053768-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000054013-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000054744-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000054909-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000055409-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000058390-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000058738-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000058931-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000059153-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000060600-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000061450-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000061751-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000065793-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000066698-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000067904-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000068478-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000070091-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000070434-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000072291-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000072809-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000072880-RA Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000075069-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000076517-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000080551-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000081575-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000082906-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000083034-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000083577-RA Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
PITA_000083647-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000084122-RA Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000084527-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
PITA_000085197-RA Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH