PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
PITA_000037380-RA Flavonoid IFR high pass
PITA_000039525-RA Flavonoid IFR medium pass
PITA_000040474-RA Flavonoid IFR low borderline
PITA_000040478-RA Flavonoid IFR low borderline
PITA_000040582-RA Flavonoid IFR low borderline
PITA_000040908-RA Flavonoid IFR low borderline
PITA_000041502-RA Flavonoid IFR low borderline
PITA_000043241-RA Flavonoid IFR medium pass
PITA_000043474-RA Flavonoid IFR low borderline
PITA_000043679-RA Flavonoid IFR high pass
PITA_000044480-RA Flavonoid IFR low borderline
PITA_000045885-RA Flavonoid IFR low borderline
PITA_000046731-RA Flavonoid IFR low borderline
PITA_000047724-RA Flavonoid IFR high pass
PITA_000048700-RA Flavonoid IFR high pass
PITA_000048807-RA Flavonoid IFR low borderline
PITA_000050000-RA Flavonoid IFR medium pass
PITA_000050506-RA Flavonoid IFR high pass
PITA_000050669-RA Flavonoid IFR low borderline
PITA_000052350-RA Flavonoid IFR low borderline
PITA_000053115-RA Flavonoid IFR low borderline
PITA_000053551-RA Flavonoid IFR medium pass
PITA_000053681-RA Flavonoid IFR low borderline
PITA_000053682-RA Flavonoid IFR high pass
PITA_000054071-RA Flavonoid IFR high pass
PITA_000054415-RA Flavonoid IFR medium pass
PITA_000054881-RA Flavonoid IFR low borderline
PITA_000055059-RA Flavonoid IFR high pass
PITA_000055142-RA Flavonoid IFR low borderline
PITA_000055161-RA Flavonoid IFR low borderline
PITA_000055578-RA Flavonoid IFR low borderline
PITA_000056163-RA Flavonoid IFR low borderline
PITA_000057496-RA Flavonoid IFR high pass
PITA_000057529-RA Flavonoid IFR low borderline
PITA_000057836-RA Flavonoid IFR low borderline
PITA_000058607-RA Flavonoid IFR low borderline
PITA_000058980-RA Flavonoid IFR low borderline
PITA_000059305-RA Flavonoid IFR low borderline
PITA_000059796-RA Flavonoid IFR low borderline
PITA_000061041-RA Flavonoid IFR medium pass
PITA_000062026-RA Flavonoid IFR medium pass
PITA_000062171-RA Flavonoid IFR medium pass
PITA_000062333-RA Flavonoid IFR high pass
PITA_000063032-RA Flavonoid IFR high pass
PITA_000064120-RA Flavonoid IFR low borderline
PITA_000064433-RA Flavonoid IFR low borderline
PITA_000064900-RA Flavonoid IFR medium pass
PITA_000065159-RA Flavonoid IFR low borderline
PITA_000065318-RA Flavonoid IFR high pass
PITA_000065547-RA Flavonoid IFR medium pass