PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
PITA_000032651-RA Flavonoid IFS medium pass
PITA_000032652-RA Flavonoid IFS medium borderline
PITA_000032770-RA Flavonoid IFS low borderline
PITA_000032930-RA Flavonoid IFS low borderline
PITA_000033627-RA Flavonoid IFS medium borderline
PITA_000034043-RA Flavonoid IFS low borderline
PITA_000036127-RA Flavonoid IFS low borderline
PITA_000036465-RA Flavonoid IFS low borderline
PITA_000036583-RA Flavonoid IFS low borderline
PITA_000036656-RA Flavonoid IFS low borderline
PITA_000037593-RA Flavonoid IFS low borderline
PITA_000037899-RA Flavonoid IFS low borderline
PITA_000038706-RA Flavonoid IFS medium borderline
PITA_000038819-RA Flavonoid IFS medium borderline
PITA_000038820-RA Flavonoid IFS low borderline
PITA_000038893-RA Flavonoid IFS low borderline
PITA_000038956-RA Flavonoid IFS low borderline
PITA_000039553-RA Flavonoid IFS low borderline
PITA_000039601-RA Flavonoid IFS low borderline
PITA_000040347-RA Flavonoid IFS low borderline
PITA_000040627-RA Flavonoid IFS low borderline
PITA_000040629-RA Flavonoid IFS low borderline
PITA_000041044-RA Flavonoid IFS low borderline
PITA_000043024-RA Flavonoid IFS low borderline
PITA_000043025-RA Flavonoid IFS low borderline
PITA_000043158-RA Flavonoid IFS low borderline
PITA_000043159-RA Flavonoid IFS low borderline
PITA_000043510-RA Flavonoid IFS low borderline
PITA_000043621-RA Flavonoid IFS low borderline
PITA_000044373-RA Flavonoid IFS low borderline
PITA_000045152-RA Flavonoid IFS medium borderline
PITA_000045435-RA Flavonoid IFS low borderline
PITA_000045577-RA Flavonoid IFS low borderline
PITA_000045592-RA Flavonoid IFS medium pass
PITA_000046083-RA Flavonoid IFS medium borderline
PITA_000046305-RA Flavonoid IFS medium borderline
PITA_000046806-RA Flavonoid IFS low borderline
PITA_000047329-RA Flavonoid IFS low borderline
PITA_000047521-RA Flavonoid IFS medium borderline
PITA_000047689-RA Flavonoid IFS low borderline
PITA_000047816-RA Flavonoid IFS low borderline
PITA_000048237-RA Flavonoid IFS low borderline
PITA_000048238-RA Flavonoid IFS low borderline
PITA_000048290-RA Flavonoid IFS low borderline
PITA_000048445-RA Flavonoid IFS low borderline
PITA_000048450-RA Flavonoid IFS low borderline
PITA_000049425-RA Flavonoid IFS medium pass
PITA_000050479-RA Flavonoid IFS low borderline
PITA_000050489-RA Flavonoid IFS low borderline
PITA_000050737-RA Flavonoid IFS low borderline