PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Protein/Isoform Record Pathway Family Confidence Status
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Alkaloid IO medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Alkaloid IO medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Alkaloid IO medium borderline
PITA_000000241-RA Alkaloid IO medium borderline
PITA_000000461-RA Alkaloid IO medium borderline
PITA_000002318-RA Alkaloid IO low borderline
PITA_000003982-RA Alkaloid IO low borderline
PITA_000004257-RA Alkaloid IO medium borderline
PITA_000004396-RA Alkaloid IO low borderline
PITA_000004871-RA Alkaloid IO medium borderline
PITA_000008620-RA Alkaloid IO medium borderline
PITA_000008622-RA Alkaloid IO medium borderline
PITA_000008697-RA Alkaloid IO low borderline
PITA_000009196-RA Alkaloid IO low borderline
PITA_000010363-RA Alkaloid IO medium borderline
PITA_000010943-RA Alkaloid IO low borderline
PITA_000012113-RA Alkaloid IO medium borderline
PITA_000017138-RA Alkaloid IO low borderline
PITA_000019446-RA Alkaloid IO medium borderline
PITA_000024089-RA Alkaloid IO medium borderline
PITA_000024104-RA Alkaloid IO medium borderline
PITA_000025276-RA Alkaloid IO medium borderline
PITA_000025906-RA Alkaloid IO medium borderline
PITA_000027035-RA Alkaloid IO medium borderline
PITA_000027160-RA Alkaloid IO medium borderline
PITA_000027632-RA Alkaloid IO medium borderline
PITA_000028221-RA Alkaloid IO medium pass
PITA_000028224-RA Alkaloid IO medium pass
PITA_000029731-RA Alkaloid IO medium borderline
PITA_000029796-RA Alkaloid IO medium borderline
PITA_000030992-RA Alkaloid IO medium borderline
PITA_000031376-RA Alkaloid IO medium borderline
PITA_000031833-RA Alkaloid IO medium borderline
PITA_000032079-RA Alkaloid IO medium borderline
PITA_000032652-RA Alkaloid IO medium borderline
PITA_000034158-RA Alkaloid IO medium borderline
PITA_000036157-RA Alkaloid IO low borderline
PITA_000036583-RA Alkaloid IO low borderline
PITA_000037530-RA Alkaloid IO low borderline
PITA_000039315-RA Alkaloid IO low borderline
PITA_000041054-RA Alkaloid IO low borderline
PITA_000041936-RA Alkaloid IO medium borderline
PITA_000042162-RA Alkaloid IO medium borderline
PITA_000043023-RA Alkaloid IO low borderline
PITA_000043891-RA Alkaloid IO low borderline
PITA_000044925-RA Alkaloid IO medium borderline
PITA_000045435-RA Alkaloid IO low borderline
PITA_000045577-RA Alkaloid IO low borderline
PITA_000046305-RA Alkaloid IO medium borderline
PITA_000046345-RA Alkaloid IO medium borderline