PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
PITA_000046792-RA Alkaloid IO medium borderline
PITA_000047291-RA Alkaloid IO low borderline
PITA_000048309-RA Alkaloid IO medium borderline
PITA_000048450-RA Alkaloid IO low borderline
PITA_000048760-RA Alkaloid IO low borderline
PITA_000049421-RA Alkaloid IO medium borderline
PITA_000050040-RA Alkaloid IO medium borderline
PITA_000050480-RA Alkaloid IO low borderline
PITA_000050799-RA Alkaloid IO medium borderline
PITA_000051406-RA Alkaloid IO medium borderline
PITA_000051433-RA Alkaloid IO medium borderline
PITA_000052145-RA Alkaloid IO low borderline
PITA_000052204-RA Alkaloid IO medium borderline
PITA_000052529-RA Alkaloid IO low borderline
PITA_000052955-RA Alkaloid IO medium borderline
PITA_000054034-RA Alkaloid IO medium borderline
PITA_000054037-RA Alkaloid IO medium borderline
PITA_000054409-RA Alkaloid IO medium borderline
PITA_000055651-RA Alkaloid IO low borderline
PITA_000057115-RA Alkaloid IO medium borderline
PITA_000057135-RA Alkaloid IO medium borderline
PITA_000057402-RA Alkaloid IO medium borderline
PITA_000057405-RA Alkaloid IO medium borderline
PITA_000057423-RA Alkaloid IO low borderline
PITA_000057574-RA Alkaloid IO low borderline
PITA_000057647-RA Alkaloid IO medium borderline
PITA_000058052-RA Alkaloid IO low borderline
PITA_000060242-RA Alkaloid IO medium borderline
PITA_000061729-RA Alkaloid IO low borderline
PITA_000061815-RA Alkaloid IO medium borderline
PITA_000063225-RA Alkaloid IO low borderline
PITA_000063323-RA Alkaloid IO medium borderline
PITA_000063703-RA Alkaloid IO low borderline
PITA_000064139-RA Alkaloid IO low borderline
PITA_000064420-RA Alkaloid IO low borderline
PITA_000064679-RA Alkaloid IO low borderline
PITA_000066295-RA Alkaloid IO low borderline
PITA_000067401-RA Alkaloid IO low borderline
PITA_000068412-RA Alkaloid IO medium borderline
PITA_000068973-RA Alkaloid IO medium borderline
PITA_000069687-RA Alkaloid IO medium borderline
PITA_000069824-RA Alkaloid IO low borderline
PITA_000070301-RA Alkaloid IO medium borderline
PITA_000071639-RA Alkaloid IO medium pass
PITA_000072351-RA Alkaloid IO medium borderline
PITA_000072646-RA Alkaloid IO medium borderline
PITA_000073007-RA Alkaloid IO medium borderline
PITA_000073188-RA Alkaloid IO medium borderline
PITA_000074384-RA Alkaloid IO low borderline
PITA_000074413-RA Alkaloid IO low borderline